Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 913
Aptamer sequence: ATACGGGAGCCAACACCACCCGTGGCCTTCACCCAGCCAGGGGCCCCGTCTCTGAGAGCAGGTGTGACGGAT
Target unique ID: 19637
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_827 BAS-21/25 F Cell Bacillus anthracis N/A 0.5 M NaCl, 10 mM Tris-HCl, 1 mM MgCl2 (pH 7.5-7.6) 22218972
Structure information of aptamer
Aptamer Sequence: ATACGGGAGCCAACACCACCCGTGGCCTTCACCCAGCCAGGGGCCCCGTCTCTGAGAGCAGGTGTGACGGAT
The optimal secondary structure in dot-bracket notation: .((((((...........)))))).((.((((((.(((((((((...)))))))...)).)).)))).))..
The centroid secondary structure in dot-bracket notation: .((((((...........)))))).((.((((((.(((((((((...)))))))...)).)).)))).))..
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_827 Description BAS-21/25 F
Aptamer chemistry DNA Length 72 nt
GC content 65.3% Molecular weight 22,150.15 Da
Molarity of 1 μg/μl solution 45.15 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Target detection
Sequence ATACGGGAGCCAACACCACCCGTGGCCTTCACCCAGCCAGGGGCCCCGTCTCTGAGAGCAGGTGTGACGGAT
Applications Detection of Bacillus Spores
Target information
Type Detail Type Detail
ATCC ID 19637 Cell name Bacillus anthracis
Category Bacteria Organism N/A
Product type N/A Cell type N/A
Morphology N/A Tissue N/A
Disease N/A Product format Freeze-dried
Antigen expression N/A Genes expressed N/A
Cell description N/A
Application(s) N/A
Activity data

No relevant experimental diagram

 Interaction ID 913
Target type Cell
Target unique ID 19637
Activity N/A
Binding Conditions/Buffer

0.5 M NaCl, 10 mM Tris-HCl, 1 mM MgCl2 (pH 7.5-7.6)
Assay

N/A
PubMed ID 22218972
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_825 DNA ATACGGGAGCCAACACCACCCGTGGCCTTCACCCAGCCAGGGACCCCGTCTCTGAGAGCAGGTGTGACGGAT
98.61%
Apta_1048 DNA ATACGGGAGCCAACACCACCTGCGGAAAATCAACAACGACACACGCCACGATTCAGAGCAGGTGTGACGGAT 75.00%
Apta_533 DNA ATACGGGAGCCAACACCAAAGTAAGATCATCACCCGGACGCGGACATAATAGGAGAGCAGGTGTGACGGAT 72.22%
Apta_533 DNA ATACGGGAGCCAACACCAAAGTAAGATCATCACCCGGACGCGGACATAATAGGAGAGCAGGTGTGACGGAT 72.22%
Apta_824 DNA ATACGGGAGCCAACACCATCCCTCTTAGGATACAAAGCCAAACTGAGCCCGTGCAGAGCAGGTGTGACGGAT 70.83%
Apta_901 DNA ATACGGGAGCCAACACCACAAGTTGACTTGGAGGAGGGTCTAACTAGTTCGAGGAGAGCAGGTGTGACGGAT 70.83%
Apta_528 DNA ATACGGGAGCCAACACCACTTGGTTAACCAATCAAACCGGACAACGAAGGGTCCAGAGCAGGTGTGACGGAT 69.44%
Apta_526 DNA ATACGGGAGCCAACACCAAGTAACACACGCGGACCAGAAATACATCCCCCCGTAGAGCAGGTGTGACGGAT 68.06%
Apta_527 DNA ATACGGGAGCCAACACCAACAACCTAGATGTTCTGATAACACGAATCGCTTCGAAGAGCAGGTGTGACGGAT 68.06%
Apta_531 DNA ATACGGGAGCCAACACCACATCGACTTACGAATCAACGCGTTTATTATTGGTTCAGAGCAGGTGTGACGGAT 68.06%
Apta_903 DNA ATACGGGAGCCAACACCAGACGGTAAATAAAGTCAGTATCGATACTCTATTCGAGAGCAGGTGTGACGGAT 68.06%
Apta_904 DNA ATACGGGAGCCAACACCAGACGGTAAATAAAGTCAGTATCGAGTACTCTATTCGAGAGCAGGTGTGACGGAT 68.06%
Apta_898 DNA ATACGGGAGCCAACACCAACAAAACTAGCAAATTAGAGCCGTATCGGAGCCTATAGAGCAGGTGTGACGGAT 66.67%
Apta_907 DNA ATACGGGAGCCAACACCACAACAAGATAAAGTATCAATCTGGTTGACGGACGTGAGAGCAGGTGTGACGGAT 66.67%
Apta_908 DNA ATACGGGAGCCAACACCAATTCCGCCAAAGTCTGCTAATAAACGGACGCCGGGGAGAGCAGGTGTGACGGAT 66.67%
Apta_954 DNA ATACGGGAGCCAACACCAGGACTAACATTATAAGAATTGCGAATAATCATTGGAGAGCAGGTGTGACGGAT 66.67%
Apta_896 DNA ATACGGGAGCCAACACCATAAGTCTAAAAAACTGGGAGTAAACACAATGTGTATAGAGCAGGTGTGACGGAT 65.28%
Apta_902 DNA ATACGGGAGCCAACACCACCAACATTATCAGAGTATGTTACTTATAGTGGTGGCAGAGCAGGTGTGACGGAT 65.28%
Apta_1049 DNA ATACGGGAGCCAACACCATGTACATTGTAGATTTATTTGCCCAAAACCCAAGAAGAGCAGGTGTGACGGAT 65.28%
Apta_897 DNA ATACGGGAGCCAACACCACTCTTATTTCCGGAAGTGGTTCTTCAACAGAGGAATAGAGCAGGTGTGACGGAT 63.89%

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AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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