AptaDB: Result

Interaction ID: 903

Aptamer sequence: TGCGTGAGCGGTAGGCCCCTACGACCCACTGTGGTTGGGC

Target unique ID: 29521

Aptamer ID	Aptamer descriptor	Target chemistry	Target name	Affinity	Binding Conditions/Buffer	PubMed ID
Apta_817	CCFM641-5	Cell	Bififidobacterium bififidum	10.69 nM	PBS at 37 ℃ for 45 min with slight agitation	28441340

Aptamer Sequence:	TGCGTGAGCGGTAGGCCCCTACGACCCACTGTGGTTGGGC
The optimal secondary structure in dot-bracket notation:	(((....)))....(((((((((......)))))..))))
The centroid secondary structure in dot-bracket notation:	(((....)))....((((((((........))))..))))

The MFE structure

The Centroid structure

The mountain plot representation

Type	Detail	Type	Detail
Aptamer ID	Apta_817	Description	CCFM641-5
Aptamer chemistry	DNA	Length	40 nt
GC content	67.5%	Molecular weight	12,345.89 Da
Molarity of 1 μg/μl solution	81.00 μM	Number of G-quadruplexes	No QGRS found
G-Score	N/A	Function	Target detection
Sequence	TGCGTGAGCGGTAGGCCCCTACGACCCACTGTGGTTGGGC
Applications	Detection of Bifidobacterium bifidum

Type	Detail	Type	Detail
ATCC ID	29521	Cell name	Bififidobacterium bififidum
Category	Bacteria	Organism	N/A
Product type	Anaerobe	Cell type	N/A
Morphology	N/A	Tissue	N/A
Disease	N/A	Product format	Freeze-dried
Antigen expression	N/A	Genes expressed	N/A
Cell description	N/A
Application(s)	Bioinformatics

	Interaction ID	903
	Target type	Cell
	Target unique ID	29521
	Activity	10.69 nM
	Binding Conditions/Buffer	PBS at 37 ℃ for 45 min with slight agitation
	Assay	Binding ability of aptamer CCFM641-5 against bifidobacterium bifidum
	PubMed ID	28441340

Aptamer ID	Aptamer chemistry	Sequence	Similarity
Apta_1046	DNA	TCGCATGGAGGGCAGAGCCGCCTGCCGGGATCCGGCCCTCTTGGGCGGGC	62.00%
Apta_437	DNA	TCACAGTCCCGGTGCCGCACTAAAACCCATTGTTGTGCGA	57.50%
Apta_748	DNA	AGCTTGAGGGTGGGCGGGTGGACGCGGTAGTGGTATATAGGTCGG	55.56%
Apta_221	DNA	GTCCTAGCAGACACTCGGCCATCACGCCCATTGGTTTGCA	55.00%
Apta_420	DNA	AGGGACGGGCTAAGTAACTGTGGAGGGT	55.00%
Apta_853	DNA	TGACCGAGTGTCTGGTCATTTTCGATGTCTGTTGTTAGGC	55.00%
Apta_1059	DNA	TCGTGACGCCGTGCAGTTACCGATACGAGCCTCGTTTTG	55.00%
Apta_821	DNA	CACAGTCACTCAGACGGCCGCTATTGTTGCCAGATTGCCTTTGGC	53.33%
Apta_835	DNA	TATGGCGTGGCAAGCTTGGCCCGCTTCTCAAGCATGGTTATCTAC	53.33%
Apta_801	DNA	TGCGTGTGTAGTGTGTCTGCATGCCCCTGTAATCGCCCATGGGTAGCCTCTTAGGGATTTGGGCGG	53.03%
Apta_12	DNA	TGAGGGGGTGGGTGGGACGGGTTGG	52.50%
Apta_14	DNA	AGCGGGGGGGGCTGGGCTGGGTGGG	52.50%
Apta_56	DNA	GCAGCTAAGCAGGCGGCTCACAAAACCATTCGCATGCGGC	52.50%
Apta_57	DNA	GCGGGTCGGTTGCTCGCTTCGCCCGATCGGTCTAAGGGTG	52.50%
Apta_60	DNA	GGAATGAGTGCCCTGCAAGCGAGGGCTAGC	52.50%
Apta_159	DNA	GCGTGCAGCATGACCACCGATGTCACACTTAATGAGAAT	52.50%
Apta_253	DNA	CCCTGTTCGCTATCCCCCATCCCCCGATTGC	52.50%
Apta_259	DNA	GCAAGTATGAGCGCAGGAGTTAGGTCCCGTGGCGATGGGT	52.50%
Apta_264	DNA	GGCGTTGTCGGGCGCAGGTGTAGGCCTCGTGGTGGTGGGT	52.50%
Apta_308	DNA	TGGCGGTACGGGCCGTGCACCCACTTACCTGGGAAGTGA	52.50%

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