Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 954
Aptamer sequence: CCCAGAAACAGCACCCTTACATCGACTGGACCTTCCGCG
Target unique ID: Other-10
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_868 C1S Other antivesicular stomatitis virus polyclonal antibodies N/A DPBS 23016897
Structure information of aptamer
Aptamer Sequence: CCCAGAAACAGCACCCTTACATCGACTGGACCTTCCGCG
The optimal secondary structure in dot-bracket notation: .((((....................))))..........
The centroid secondary structure in dot-bracket notation: .((((....................))))..........
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_868 Description C1S
Aptamer chemistry DNA Length 39 nt
GC content 59.0% Molecular weight 11,826.61 Da
Molarity of 1 μg/μl solution 84.56 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Targeted therapy
Sequence CCCAGAAACAGCACCCTTACATCGACTGGACCTTCCGCG
Applications Shielding Virus from Neutralizing Antibodies
Target information
Type Detail Type Detail
Target ID Other-10 Name antivesicular stomatitis virus polyclonal antibodies
Activity data

No relevant experimental diagram

 Interaction ID 954
Target type Other
Target unique ID Other-10
Activity N/A
Binding Conditions/Buffer

DPBS
Assay

N/A
PubMed ID 23016897
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_871 DNA CCAACCACACATCCTTCCATCGACATGGACCCACCGTTCC 67.50%
Apta_877 DNA GTGCGAAGCGCCTCCACTGTACATCCACTCCTTCTGCC 58.97%
Apta_663 DNA CACGCACAGAAGACACCTACAGGGCCAGATCACAATCGGTTAGTGAACTCGTACGGCGCG 56.67%
Apta_730 DNA ACCAAACACAGATGCAACCTGACTTCTAACGTCATTTGGTG 56.10%
Apta_728 DNA CGACCCGGCACAAACCCAGAACCATATACACGATCATTAGTCTCCTGGGCCG 55.77%
Apta_873 DNA CCACCGAGCCTACCACATGTGACATCCCAGGACATAGCTG 55.00%
Apta_1215 DNA GTCGAATCAGCACCTCTGCATAGGTTACGTTTATACTGCG 55.00%
Apta_1232 DNA GGCCACACAAACAACATGACAACACGTCTCACATAACGCCCACGTGCTGCCGCCTCATCG 55.00%
Apta_249 DNA CCCTGTTCCCCCTCCGCCGCTTGACTCTCC 53.85%
Apta_362 DNA GGGAACGCACCGATCGCAGGTTTCCC 53.85%
Apta_1227 DNA CACACCAAACACACAAGTGGACCCTGACGCATGGATAGGGTGACGGTATACGCGGGCATG 53.33%
Apta_158 DNA CACAGGCTACGGCACGTAGAGCATCACCATGATCCTGTG 51.28%
Apta_187 DNA ACCAACCCTTTACCTCTGAGATCTCCCAAT 51.28%
Apta_253 DNA CCCTGTTCGCTATCCCCCATCCCCCGATTGC 51.28%
Apta_358 DNA GGGAATCGCCACCCGACGCAGGGTTTCCC 51.28%
Apta_360 DNA GGGAACGCATACGCCGCAGTATTTCCC 51.28%
Apta_361 DNA GGGAACGCCCGTATTGCTCGGTTCCC 51.28%
Apta_639 DNA CTAAGCACAGGGAAACCAGCTAATGAGTTAGGCCTGTCCCCCACG 51.11%
Apta_821 DNA CACAGTCACTCAGACGGCCGCTATTGTTGCCAGATTGCCTTTGGC 51.11%
Apta_592 DNA CTCTCGGGACGACCACTACGCATAGTTTCTATCGCCAGGAAGGGTCGTCCC 50.98%

ABOUT

AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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