Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 908
Aptamer sequence: TAGCCCTTCAACATAGTAATATCTCTGCATTCTGTGATG
Target unique ID: 4356
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_822 | hemag1P | Cell | Lactobacillus acidophilus cell | 13 nM | 50 mM Tris-HCl (pH 7.4), 5 mM KCl, 100 mM NaCl, and 1 mM MgCl2 | 18803393 |
Structure information of aptamer
| Aptamer Sequence: | TAGCCCTTCAACATAGTAATATCTCTGCATTCTGTGATG |
| The optimal secondary structure in dot-bracket notation: | ...........(((((.(((........))))))))... |
| The centroid secondary structure in dot-bracket notation: | ...........(((((.(((........))))))))... |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_822 | Description | hemag1P |
| Aptamer chemistry | DNA | Length | 39 nt |
| GC content | 38.5% | Molecular weight | 11,906.68 Da |
| Molarity of 1 μg/μl solution | 83.99 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Targeted binding |
| Sequence | TAGCCCTTCAACATAGTAATATCTCTGCATTCTGTGATG | ||
| Applications | Detection of Live Bacterial Cells | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| ATCC ID | 4356 | Cell name | Lactobacillus acidophilus cell |
| Category | Bacteria | Organism | N/A |
| Product type | Preceptrol culture | Cell type | N/A |
| Morphology | N/A | Tissue | N/A |
| Disease | N/A | Product format | Freeze-dried |
| Antigen expression | N/A | Genes expressed | N/A |
| Cell description | N/A |
|
|
| Application(s) | Bioinformatics | ||
Activity data
 |
Interaction ID | 908 |
| Target type | Cell | |
| Target unique ID | 4356 | |
| Activity | 13 nM | |
| Binding Conditions/Buffer | 50 mM Tris-HCl (pH 7.4), 5 mM KCl, 100 mM NaCl, and 1 mM MgCl2 |
|
| Assay | Binding characteristics of aptamer hemag1P as determined via flow cytometry |
|
| PubMed ID | 18803393 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_917 | DNA | TCGATTTCCTTAGTTGTCTTCCTTAGTGAG | |
| Apta_286 | DNA | TACTCCGTCACTTTAGTGGATATAACAACCTCCCTATGGG | |
| Apta_1216 | DNA | AGCGTCCTCTGCATAGTGATTTACGCTATGTGTACAGTGC | |
| Apta_1200 | DNA | GGCACACAGGACTATACAGTGTTGCAGTGTTGCTG | |
| Apta_1206 | DNA | GGCAGCAGCAATGTAACACTGTGTGTATGTGTTGG | |
| Apta_777 | DNA | GAGCCCTATCTCACACCGCACCCGCAAACTATCATCCTACATG | |
| Apta_819 | DNA | GCGCCCTCTCACGTGGCACTCAGAGTGCCGGAAGTTCTGCGTTAT | |
| Apta_1162 | DNA | AGAGGCTACAGCGATAAGTCGACATTGCTGACCGTACCTAGTAATACGT | |
| Apta_183 | DNA | TAGCACTGTGCGGCGCGTATTGTTCTAATCTGATTACATT | |
| Apta_222 | DNA | AGCGACTGACGATCTTGAGTAAACCGCTCATCCACGTAGT | |
| Apta_261 | DNA | TAAACCCCAAAACAGTGCAACTAGGTGTAGGTCCCGTGGT | |
| Apta_284 | DNA | CACTCCGTCACTTTAGTGGATCTTTATAAAACCGATGCTG | |
| Apta_604 | DNA | TCCTGACCTTAGCCTATGTTTTCTCTACCGGCTATGTTAC | |
| Apta_961 | DNA | CTAGTGGGGACCTTCCAGGGTAACTGCTCGCATTCTCCAT | |
| Apta_405 | DNA | TCTAGCCCACTGCATAGAGGTAGCCACGTATGTGGGTGTTACCCATTCGTAGCTACCGGTG | |
| Apta_971 | DNA | TAGTCTAGGAACGGTACGATCGTATTCCAAGGACTTTGCTGGTGGTATCC | |
| Apta_1155 | DNA | TAGTTTTATTTGTTCATTTTGTGTATTGTTTTGA | |
| Apta_1282 | DNA | TCCTCTCACACATCTTATCCCCTAGGG | |
| Apta_744 | DNA | GTGGCCAGTCACTCAATTGGGTGTAGGGGTGGGGATTGTGGGTTG | |
| Apta_1033 | DNA | CACAGGTTCCAGGTAATACCTAAGGGTATGCTCTCGCCTATTATATGGAGCAC |
DEV TOOL
 |
 |
 |
 |