Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1118
Aptamer sequence: CCTCGCTATGATGGAGTGCGTTTAGATCAGGGAACGGGTT
Target unique ID: Other-53
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_1065 | Apt_NDV04 | Other | Newcastle disease virus (NDV) | 24.3 nM | PBS (pH 7.2) with 150 mM NaCl and 5 mM MgCl2 | 32790805 |
Structure information of aptamer
| Aptamer Sequence: | CCTCGCTATGATGGAGTGCGTTTAGATCAGGGAACGGGTT |
| The optimal secondary structure in dot-bracket notation: | .(((.........)))..(((((........))))).... |
| The centroid secondary structure in dot-bracket notation: | ........................................ |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_1065 | Description | Apt_NDV04 |
| Aptamer chemistry | DNA | Length | 40 nt |
| GC content | 52.5% | Molecular weight | 12,422.97 Da |
| Molarity of 1 μg/μl solution | 80.50 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Target detection |
| Sequence | CCTCGCTATGATGGAGTGCGTTTAGATCAGGGAACGGGTT | ||
| Applications | Detection of NDV in poultry samples | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-53 | Name | Newcastle disease virus (NDV) |
Activity data
 |
Interaction ID | 1118 |
| Target type | Other | |
| Target unique ID | Other-53 | |
| Activity | 24.3 nM | |
| Binding Conditions/Buffer | PBS (pH 7.2) with 150 mM NaCl and 5 mM MgCl2 |
|
| Assay | Highly specific aptamers against NDV |
|
| PubMed ID | 32790805 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_49 | DNA | CTTCCATGTTGAGGCGTTTATACCAGTTATCATCGGACTA | |
| Apta_302 | DNA | ATCCTGTGAGGAATGCTCATGCATAGCAAGGGCT | |
| Apta_320 | DNA | GCACTCTGTGGGGGTGGACGGGCCGGGT | |
| Apta_1023 | DNA | CTCCTTCAACGAAGTGGGTCTCCTTCAACGAAGTGGGTCTC | |
| Apta_75 | DNA | CACTGGTAGGTTGGTGTGGTTGGGGCCAGTG | |
| Apta_259 | DNA | GCAAGTATGAGCGCAGGAGTTAGGTCCCGTGGCGATGGGT | |
| Apta_348 | DNA | ACTTGCTCTGATGCGACAACCTTTTGCCCAGATAGTAAGT | |
| Apta_682 | DNA | CCTTGTAGATCGGGTGTGGTTTGGCGTAGG | |
| Apta_915 | DNA | ACTTCGGCTAGTTAGGGGGTAGTTTAGATCGTCTCTACAT | |
| Apta_1022 | DNA | CTCCTTCAACGAAGTGGGTTCCTTCAACGAAGTGGGTCTC | |
| Apta_1204 | DNA | GGCACGATGTGGCTACATCGATCGCGGTACTGGTG | |
| Apta_1204 | DNA | GGCACGATGTGGCTACATCGATCGCGGTACTGGTG | |
| Apta_596 | DNA | GGTGGCTGTTGGTCGAGGCTTATTAGTGTAGTCAATGGAGGCAGGCGACG | |
| Apta_940 | DNA | TGTGCGGGGGAGGGGAGTGGCGCTGTTGGTGCGGGTATAGCGCGTGGTGT | |
| Apta_753 | DNA | GGGCACAGACGGAAGATGAGAATTGTGGGGCTTAGTATAGTGAGGTGCGTGT | |
| Apta_751 | DNA | GGTCGCAGATGGATTAAGTATGTGGGTGGGGGGGTGGAAGTTAAT | |
| Apta_752 | DNA | GCTATCTTATGGAAATTTCGTGTAGGGTTTGGTGTGGCGGGGCTA | |
| Apta_591 | DNA | CTCTCGGGACGACGGCTGGCACGTTTGGTTCAAGAATGTGGGTGTCGTCCC | |
| Apta_46 | DNA | CGGGTGGGAGTTGTGGGGGGGGGTGGGAGGGTT | |
| Apta_70 | DNA | AGGTCGTAGGTTGGTGTGGTTGGGGCGACCT |
DEV TOOL
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