Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 752
Aptamer sequence: AAGCTTTTTTGACTGACTGCAGCGATTCTTGATCGCCACGGTCTGGAAAAAGAG
Target unique ID: 14210
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_622 SS4-54 Molecule Omethoate 2 μM 300 mM NaCl, 50 mM KCl, 10 mM MgCl2, 50 mM Tris/HCl, and pH 8.3 22261866
Structure information of aptamer
Aptamer Sequence: AAGCTTTTTTGACTGACTGCAGCGATTCTTGATCGCCACGGTCTGGAAAAAGAG
The optimal secondary structure in dot-bracket notation: ...(((((((....(((((..((((((...))))))..)))))..)))))))..
The centroid secondary structure in dot-bracket notation: ...(((((((....(((((..((((((...))))))..)))))..)))))))..
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_622 Description SS4-54
Aptamer chemistry DNA Length 54 nt
GC content 46.3% Molecular weight 16,675.71 Da
Molarity of 1 μg/μl solution 59.97 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Aptasensor
Sequence AAGCTTTTTTGACTGACTGCAGCGATTCTTGATCGCCACGGTCTGGAAAAAGAG
Applications Analysis and neutralization of the residues of the four organophosphorus pesticides
Target information
Type Detail Type Detail
PubChem ID 14210 Molecular name Omethoate
Molecular formula C5H12NO4PS Molecular weight 213.19
IUPAC name 2-dimethoxyphosphorylsulfanyl-N-methylacetamide InChIKey PZXOQEXFMJCDPG-UHFFFAOYSA-N
LogP 0.866 Topological polar surface area 64.63
Hydrogen bond acceptor 5 Hydrogen bond donor 1

Synonym(s):
OMETHOATE; Dimethoxon; 1113-02-6; Folimat; PO-Dimethoate; Dimethoate O-analog; Omethoat; Dimethoate-met; P=O-Rogor; Dimethoate PO isologue; O-Analog of dimethoate; Dimethoate oxygen analog; Bayer 45,432; BAY 45432; 2-Dimethoxyphosphinoylthio-N-methylacetamide; O,O-Dimethyl S-methylcarbamoylmethyl phosphorothioate; O,O-Dimethyl S-(N-methylcarbamoylmethyl) thiophosphate; O,O-Dimethyl S-((methylcarbamoyl)methyl)phosphorothioate; O,O-Dimethyl-S-(N-methylcarbamoylmethyl)phosphorothioate; 2-dimethoxyphosphorylsulfanyl-N-methylacetamide; ENT 25,776; O,O-Dimethyl S-(N-methylcarbamoylmethyl) phosphorothiolate; UNII-28U28EWE79; CHEBI:38730; S6876; O,O-Dimethyl-S-(2-oxo-3-azabutyl)-monothiophosphate; Phosphorothioic acid, O,O-dimethyl S-(2-(methylamino)-2-oxoethyl) ester; Phosphorothioic acid, O,O-dimethyl S-[2-(methylamino)-2-oxoethyl] ester; Dimethyl-S-(N-methyl-carbamoyl-methyl)phosphorothiolate; Phosphorothioic acid, O,O-dimethyl ester, S-ester with 2-mercapto-N-methylacetamide; O,O-Dimethyl S-(2-(methylamino)-2-oxoethyl) phosphorothioate; O,O-Dimethyl S-(2-(methylamino)-2-oxoethyl)phosphorothioate; 28U28EWE79; Acetamide, 2-mercapto-N-methyl-, S-ester with O,O-dimethyl phosphorothioate; O,O-Dimetil-S-(N-metil-carbamoil)-metil-monotiofosfato; O,O-Dimethyl S-[(methylcarbamoyl)methyl] phosphorothioate; O,O-dimethyl S-[2-(methylamino)-2-oxoethyl] phosphorothioate; O,O-Dimethyl-S-((N-methyl-carbamoyl)-methyl)-monothiofosfaat; O-methoate; Thiophosphate de O,O-dimethyle et de S-(N-methylcarbamoyl) methyle; o,o-Dimethyl S-[2-(methylamino)-2-oxoethyl] thiophosphate; Omethoate [BSI:ISO]; Dimethoate Oxon; Bayer S-6876; HSDB 6715; EINECS 214-197-8; Bayer 45432; BRN 1785256; C5H12NO4PS; AI3-25776; Folimat 4E; S-6876; O,O-Dimethyl-S-(N-methyl-carbamoyl-methyl)-thiolphosphat [German]; O,O-Dimetil-S-(N-metil-carbamoil)-metil-monotiofosfato [Italian]; O,O-Dimethyl phosphorothioate S-ester with 2-mercapto-N-methylacetamide; O,O-Dimethyl-S-((N-methyl-carbamoyl)-methyl)-monothiofosfaat [Dutch]; O,O-Dimethyl-S-(N-methyl-carbamoyl)-methyl-monothiophosphat [German]; Thiophosphate de O,O-dimethyle et de S-(N-methylcarbamoyl) methyle [French]; DSSTox_CID_17580; DSSTox_RID_79343; DSSTox_GSID_37580; SCHEMBL63063; 4-04-00-00251 (Beilstein Handbook Reference); Omethoate, analytical standard; CHEMBL2270068; DTXSID4037580; Omethoate-d6(O,O-dimethyl-d6); O,O-Dimethyl-S-(N-methyl-carbamoyl-methyl)-thiolphosphat; O,O-Dimethyl-S-(N-methyl-carbamoyl)-methyl-monothiophosphat; ZINC2039915; Tox21_300968; BDBM50487987; MFCD00055441; Omethoate 100 microg/mL in Acetone; AKOS015893016; Omethoate 1000 microg/mL in Acetone; Omethoate 10 microg/mL in Acetonitrile; NCGC00160633-01; NCGC00160633-02; NCGC00254871-01; O358; CAS-1113-02-6; DB-040962; Omethoate, PESTANAL(R), analytical standard; C18662; F21411; 74440-EP2275422A1; 74440-EP2305662A1; 74440-EP2308857A1; 113O026; J-002555; Q2204769; O,O-dimethyl S-2-(methylamino)-2-oxoethyl phosphorothioate; O,O-Dimethyl-S-(N-methyl-carbamoyl-methyl)-thiolphosphate; O,O-Dimethyl S-[2-(methylamino)-2-oxoethyl] thiophosphate #; O,O-Dimethyl-S-(N-methyl-carbamoyl)-methyl-monothiophosphate

Activity data
Interaction ID 660
Target type Molecule
Target unique ID 90479
Activity 0.9 μM
Binding Conditions/Buffer

300 mM NaCl, 50 mM KCl, 10 mM MgCl2, 50 mM Tris/HCl, and pH 8.3

Assay

Specifificity of SS2-55 and SS4-54 aptamers

PubMed ID 22261866
Interaction ID 752
Target type Molecule
Target unique ID 14210
Activity 2 μM
Binding Conditions/Buffer

300 mM NaCl, 50 mM KCl, 10 mM MgCl2, 50 mM Tris/HCl, and pH 8.3

Assay

Specifificity of SS2-55 and SS4-54 aptamers

PubMed ID 22261866
Interaction ID 766
Target type Molecule
Target unique ID 4790
Activity 1.43 μM
Binding Conditions/Buffer

300 mM NaCl, 50 mM KCl, 10 mM MgCl2, 50 mM Tris/HCl, and pH 8.3

Assay

Specifificity of SS2-55 and SS4-54 aptamers

PubMed ID 22261866
Interaction ID 770
Target type Molecule
Target unique ID 38779
Activity 1.25 μM
Binding Conditions/Buffer

300 mM NaCl, 50 mM KCl, 10 mM MgCl2, 50 mM Tris/HCl, and pH 8.3

Assay

Specifificity of SS2-55 and SS4-54 aptamers

PubMed ID 22261866
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_621 DNA AAGCTTGCTTTATAGCCTGCAGCGATTCTTGATCGGAAAAGGCTGAGAGCTACGC 67.27%
Apta_510 DNA TGTAATTTGTCTGCAGCGGTTCTTGATCGCTGACACCATATTATGAAGA 61.11%
Apta_1061 DNA TATTTATTGAATGCTGTAATTTCGCCACGCGAAAGTAGG 59.26%
Apta_340 DNA TACTCAGGGCACTGCAAGCAATTGTGGTCCCAATGGGCTGAGTA 51.85%
Apta_348 DNA ACTTGCTCTGATGCGACAACCTTTTGCCCAGATAGTAAGT 51.85%
Apta_489 DNA GGGGTTAAATATTCCCACATTGCCTGCGCCAGTACAAATAG 51.85%
Apta_912 DNA TAGTATGGACTTGTCTTCTTGTCAGAGTCTGGCAGCACGT 51.85%
Apta_694 DNA ACTCACTATGGAAGAGATGGCGACATCTCTTCTCCGAGCCGGTCGAAATAGTGAGT 51.79%
Apta_451 DNA ATACCAGCTTATTCAATTGAGTAAGAGTGCACTATGTTTTACGAGCCGTTTCCTCGGCAGATAGTAAGTGCAATCT 51.32%
Apta_796 DNA GTGCTGGATGTCACCTCCACTCACCACCTCTTCTCCGCTCCTCGTCATGACACATCCAG 50.85%
Apta_57 DNA GCGGGTCGGTTGCTCGCTTCGCCCGATCGGTCTAAGGGTG 50.00%
Apta_163 DNA GCGCATGACCATTGATGTCTGCACCATCAGAGGCAGAG 50.00%
Apta_259 DNA GCAAGTATGAGCGCAGGAGTTAGGTCCCGTGGCGATGGGT 50.00%
Apta_260 DNA GACGTTAAGCTAGCAGGTGTTAGGTCCCGTGGTGATGAAT 50.00%
Apta_273 DNA ATAAGCTGAGCATCTTAGATCCCCGTCAAGGGCAGCGTAA 50.00%
Apta_274 DNA GATACTGAGCATCGTACATGATCCCGCAACGGGCAGTATT 50.00%
Apta_449 DNA CGCACTATGTTTTACGAGCCGTTTCCTCGGCAGATAGTAAGTGCG 50.00%
Apta_476 DNA CCTATCTTATTCGTTGCGGACTCCCCGGTCGGTATGTATG 50.00%
Apta_776 DNA AGTGGTCGAACTACACATCCTTGAACTGCGGAATTATCTAC 50.00%
Apta_778 DNA GAAGACGAGCGGCGAGTGTTATTACGCTTGGAAACAACCCC 50.00%