Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 959
Aptamer sequence: CCACCGAGCCTACCACATGTGACATCCCAGGACATAGCTG
Target unique ID: Other-10
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_873 C10S Other antivesicular stomatitis virus polyclonal antibodies N/A DPBS 23016897
Structure information of aptamer
Aptamer Sequence: CCACCGAGCCTACCACATGTGACATCCCAGGACATAGCTG
The optimal secondary structure in dot-bracket notation: ......(((........((((...((....))))))))).
The centroid secondary structure in dot-bracket notation: ......((.............................)).
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_873 Description C10S
Aptamer chemistry DNA Length 40 nt
GC content 57.5% Molecular weight 12,179.85 Da
Molarity of 1 μg/μl solution 82.10 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Targeted therapy
Sequence CCACCGAGCCTACCACATGTGACATCCCAGGACATAGCTG
Applications Shielding Virus from Neutralizing Antibodies
Target information
Type Detail Type Detail
Target ID Other-10 Name antivesicular stomatitis virus polyclonal antibodies
Activity data

No relevant experimental diagram

 Interaction ID 959
Target type Other
Target unique ID Other-10
Activity N/A
Binding Conditions/Buffer

DPBS
Assay

N/A
PubMed ID 23016897
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_158 DNA CACAGGCTACGGCACGTAGAGCATCACCATGATCCTGTG 62.50%
Apta_339 DNA CACAGGCTACGGCACGTAGAGCATCACCATGATCCTGTGT 60.00%
Apta_641 DNA TTCAAGACGATGCCTGGCGCGAGTTACACACTTGCATGGAGCTGG 55.56%
Apta_868 DNA CCCAGAAACAGCACCCTTACATCGACTGGACCTTCCGCG 55.00%
Apta_1203 DNA CCCTGCGGGGCTACCCGATATGTGTCCGAGTGGTG 55.00%
Apta_1208 DNA CCCTGCGGGGCTGCCCGATATGTGTCCAGGTGGTG 55.00%
Apta_592 DNA CTCTCGGGACGACCACTACGCATAGTTTCTATCGCCAGGAAGGGTCGTCCC 54.90%
Apta_652 DNA CCTGCACCTCGTCCAGCATGCACACCGATGGCGGTCCTGGCAGGGGGTGTGCGTG 52.73%
Apta_316 DNA CCGCCCAAATCCCTAAGAGAAGACTGTAATGACATCAAACCAGACACACTACACACGCA 52.54%
Apta_689 DNA CCACACAACAGCCTACGTGGATACACCACATACATCCCATAACCCCGTGTCATGTGTCG 52.54%
Apta_60 DNA GGAATGAGTGCCCTGCAAGCGAGGGCTAGC 52.50%
Apta_187 DNA ACCAACCCTTTACCTCTGAGATCTCCCAAT 52.50%
Apta_227 DNA ACGCGCCTATGGTGCATCGCATGCCGACC 52.50%
Apta_250 DNA CCCTGGCCGCCCTCTGGCGCGCTGATGT 52.50%
Apta_877 DNA GTGCGAAGCGCCTCCACTGTACATCCACTCCTTCTGCC 52.50%
Apta_946 DNA TACCGGGTAATATGCACACATGCTGATAGCAAGCAATGCA 52.50%
Apta_962 DNA CCACACCGAGATGTTGTGACGGTTCCGATTGGCAAACTGA 52.50%
Apta_985 DNA CCAGGAGGACCCTATTCTCGTGTATCGACGAGATCCAGTG 52.50%
Apta_1199 DNA CCCTGCGGGGCTGCCCGATATGTGTCCAAGTGGTG 52.50%
Apta_1200 DNA GGCACACAGGACTATACAGTGTTGCAGTGTTGCTG 52.50%

ABOUT

AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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