Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 946
Aptamer sequence: CACGGATCCTGACAAGGATGTGTGCGTTGTCGAGACCTGCGACCGGAACACTACACTGTGTGGGATGGATTTCTTTACAGTTGTGTGCAGCTCCGTCCGACTCTTCCTAGCTATGGTTCGATCAAGA
Target unique ID: Other-8
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_860 N Other Crude Extracellular Mixture(CEM) of E. coli. N/A 50 mm HEPES (pH 7.5), 150 mM NaCl, 15 mM MgCl2, and 0.01% Tween 20, r.t. 21412961
Structure information of aptamer
Aptamer Sequence: CACGGATCCTGACAAGGATGTGTGCGTTGTCGAGACCTGCGACCGGAACACTACACTGTGTGGGATGGATTTCTTTACAGTTGTGTGCAGCTCCGTCCGACTCTTCCTAGCTATGGTTCGATCAAGA
The optimal secondary structure in dot-bracket notation: ((((.(((((....))))).))))..((((((((.((.((....(((((((......)))).(((((((...((.((((....)))).)).)))))))......)))..))...))))))).)))..
The centroid secondary structure in dot-bracket notation: ((((.(((((....))))).))))...((((((.(((.((....(((..((......))...(((((((...((.((((....)))).)).)))))))......)))..))...))))))).))...
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_860 Description N
Aptamer chemistry DNA Length 127 nt
GC content 52.0% Molecular weight 39,215.02 Da
Molarity of 1 μg/μl solution 25.50 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Target detection
Sequence CACGGATCCTGACAAGGATGTGTGCGTTGTCGAGACCTGCGACCGGAACACTACACTGTGTGGGATGGATTTCTTTACAGTTGTGTGCAGCTCCGTCCGACTCTTCCTAGCTATGGTTCGATCAAGA
Applications Probes as Bacterial Indicators
Target information
Type Detail Type Detail
Target ID Other-8 Name Crude Extracellular Mixture(CEM) of E. coli.
Activity data
Interaction ID 946
Target type Other
Target unique ID Other-8
Activity N/A
Binding Conditions/Buffer

50 mm HEPES (pH 7.5), 150 mM NaCl, 15 mM MgCl2, and 0.01% Tween 20, r.t.
Assay

Growth time required for achieving single-cell detection
PubMed ID 21412961
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_704 DNA GTACGAATTCACGAGGTTGCCAGCGGGGCCAGCCACTTCTGTCAGTGAATTCCTGCTCGTATATCTACTCGCCCGCCTGCGAGCATGGAGTCGGATCCTCTA 52.76%
Apta_435 DNA CCTTCGTTGTCTGCCTTCGTAGGACCGCAGACATCGACGCAGGGAAATTCCGCAAGTCCAGCCAAATGCCACCCTTCAGAATTCGCACCA 51.97%
Apta_934 DNA GACGCTTACTCAGGTGTGACTCGTGAACCCACCTCAGGGCATCTTACATTTCTTCTAAGTTGTTACCATGTTTCGAAGGACGCAGATGAAGTCTC 51.97%
Apta_466 DNA AGCTGACACAGCAGGTTGGTGGGGGTGGCTCACATCATGGTAGAATGACTGAACAGCGTTGATTAAAAGGCACGAGTCGAGCAATCTCGAAAT 51.18%
Apta_582 DNA GTACCAGCTTATTCAATTGGGCGAAGGAACATACGGCAGTTTATGGCCGCTATCGAGATAGACTATCATCTCAACGTCTTCTAGATAGTATGTTCATCAG 51.18%
Apta_465 DNA AGCTGACACAGCAGGTTGGTGGGGGTGGCTTCCAGTTGGGTTGACAATACGTAGGGACACGAAGTCCAACCACGAGTCGAGCAATCTCGAAAT 50.39%
Apta_625 DNA ATACCAGCTTATTCAATTCAGGGCGGTATGAGGCTCGATCAAGGTCGGAGCGAGAATTTTTTCGCGGAGTCGGCTGGATCAGATAGTAAGTGCAATCT 50.39%
Apta_763 DNA AGCAGAGTTCACGACCCGATAAGGGGAAAACACATTTCGGATCTCCGTTGTCGCCCTGGTACCGAGTTACATACCAATCGTCGCAG 50.39%
Apta_765 DNA AGCAGAGTTCACGACCCGATAAGGGGAAAATACATTTCGGATCTCCGTTGTCGCCCTGGTACCGAGTTACATACCAATCGTCGCAG 50.39%
Apta_802 DNA ATGAGAAGCGTCGGTGTGGTTAAACACGGAACGAAGGTGCAGGAAGATTTGTCGATGCGGTGCCTGAGCGGGCTGGCAAGGCGCATA 50.39%
Apta_625 DNA ATACCAGCTTATTCAATTCAGGGCGGTATGAGGCTCGATCAAGGTCGGAGCGAGAATTTTTTCGCGGAGTCGGCTGGATCAGATAGTAAGTGCAATCT 50.39%
Apta_321 DNA AACCGCCCAAATCCCTAAGAGTCGGACTGCAACCTATGCTATCGTTGATGTCTGTCCAAGCAACACAGACACACTACACACGCACA 49.61%
Apta_581 DNA GTACCAGCTTATTCAATTCGCGGAAGACGAATTCCAAGCGCGCGCGGGTCACGCGACTTGGGAATGAGCAAGGGTTGGCCCGAGATAGTATGTTCATCAG 49.61%
Apta_761 DNA AGCAGAGTTCACGACCCGATAAGGGGAAAACACATTTCGGATCTCCGTTGTCGCCCTGATACCGAGTTACATACCAATCGTCGCAG 49.61%
Apta_764 DNA AGCAGAGTTCACGACCCGATAAGGGGAAAATACATTTCGGATCTCCGTTGTCGCCCTGATACCGAGTTACATACCAATCGTCGCAG 49.61%
Apta_804 DNA GCGGGATCCTATGACGCATTGACCCACAACACACTACTGTCGCTCGGTTCGAACTTCGTGCGACTGTTCCCTATAGTGAGTCGTATTAGAATTCCGC 49.61%
Apta_839 DNA TGAGCCCAAGCCCTGGTATGAGCCCACGGAACACTGGTCGCGCCCACTGGTTTCTATATTGGCAGGTCTACTTTGGGATC 49.61%
Apta_948 DNA TAGGGAAGAGAAGGACATATGATACTGGCCTTGACACCCTGTTGTGGCTTGATGACAATAACATTGACTAGTACATGACCACTTGA 49.61%
Apta_1130 DNA GCCGAGATTGCACTTACTATCTATTAGGAATAAGGTATGAATAGAGATGTATAAGTTGTGTGGACGGTGTAATTGAATAAGCTGGTATGCGC 49.61%
Apta_44 DNA TCTCGGACGCGTGTGGTCGGGTGGGAGTTGTGGGGGGGGGTGGGAGGGTTCTTTGTTTGATCTTTCTCGCTGCCTGGCCCTAGAGTG 48.82%

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AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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