Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 957
Aptamer sequence: CCAACCACACATCCTTCCATCGACATGGACCCACCGTTCC
Target unique ID: Other-10
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_871 C7S Other antivesicular stomatitis virus polyclonal antibodies N/A DPBS 23016897
Structure information of aptamer
Aptamer Sequence: CCAACCACACATCCTTCCATCGACATGGACCCACCGTTCC
The optimal secondary structure in dot-bracket notation: ...............(((((....)))))...........
The centroid secondary structure in dot-bracket notation: ...............(((((....)))))...........
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_871 Description C7S
Aptamer chemistry DNA Length 40 nt
GC content 57.5% Molecular weight 12,010.74 Da
Molarity of 1 μg/μl solution 83.26 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Targeted therapy
Sequence CCAACCACACATCCTTCCATCGACATGGACCCACCGTTCC
Applications Shielding Virus from Neutralizing Antibodies
Target information
Type Detail Type Detail
Target ID Other-10 Name antivesicular stomatitis virus polyclonal antibodies
Activity data

No relevant experimental diagram

 Interaction ID 957
Target type Other
Target unique ID Other-10
Activity N/A
Binding Conditions/Buffer

DPBS
Assay

N/A
PubMed ID 23016897
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_868 DNA CCCAGAAACAGCACCCTTACATCGACTGGACCTTCCGCG 67.50%
Apta_1152 DNA GACAAGGATAAATCCTTCAATGAAGTGGGTCACTCATCTGTGA 55.81%
Apta_592 DNA CTCTCGGGACGACCACTACGCATAGTTTCTATCGCCAGGAAGGGTCGTCCC 54.90%
Apta_448 DNA TAACTCACTCCATACTCACTTGCTGATTCGCCAACAACACACCCTTAAACAGTCCC 53.57%
Apta_689 DNA CCACACAACAGCCTACGTGGATACACCACATACATCCCATAACCCCGTGTCATGTGTCG 52.54%
Apta_1219 DNA GCGCAGAACCGACAGCAAAACGGAAGTCCACCACGACTATTGGTGCCCAATCTACCGTA 52.54%
Apta_251 DNA GCCCTACATTCTGTGCGACTCCCCCCCCCGC 52.50%
Apta_1269 DNA TAGCACACAACCCTTTGATTGGGATATCTCATCCCTCG 52.50%
Apta_1275 DNA CAAGTACAAACTTCCATCGCACCTCTTGCTCCCCGCGAGGGG 52.38%
Apta_556 DNA GGCTCTCGGGACGACATGGATTTTCCATCAACGAAGTGCGTCCGTCCC 52.08%
Apta_395 DNA AATCCACGTATCGACTAGCTCAAACCAGCCTGATAGAGCCATTCGCTTTA 52.00%
Apta_1218 DNA CGACACCACACAGCAGTAAGCACTACAACATAGTGGTCTAGACTATCTCGGGCCGGTG 51.72%
Apta_662 DNA GGCGCCAAACAGGACCACCATGACAATTACCCATACCACCTCATTATGCCCCATCTCCGC 51.67%
Apta_1232 DNA GGCCACACAAACAACATGACAACACGTCTCACATAACGCCCACGTGCTGCCGCCTCATCG 51.67%
Apta_1266 DNA GCATCACACACCGATACTCACCCGCCTGATTAACATTAGCCCACCGCCCACCCCCGCTGC 51.67%
Apta_730 DNA ACCAAACACAGATGCAACCTGACTTCTAACGTCATTTGGTG 51.22%
Apta_968 DNA TAACACGACAGACGTTCGGAGGTCGAACCCTGACAGCGTGGGC 51.16%
Apta_969 DNA TAACCACCCCACCTCGCTCCCGTGACACTAATGCTAATTCCAA 51.16%
Apta_1162 DNA AGAGGCTACAGCGATAAGTCGACATTGCTGACCGTACCTAGTAATACGT 51.02%
Apta_1126 DNA TCGGGCGAGTCGTCTGCGGGCGGATAGACTACGACACCGCATCGTCCTCCC 50.98%

ABOUT

AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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