Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1162
Aptamer sequence: TACGACTCACTATAGGGATCCTTCGCATCCGGCACGATGGCTAGGACACCCCGATGAATTCCCTTTAGTGAGGGTT
Target unique ID: 14990
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_1106 SE52 Cell Staphylococcus epidermidis (Winslow and Winslow) Evans N/A PBS containing 1% BSA and 0.05% Tween 20 30477331
Structure information of aptamer
Aptamer Sequence: TACGACTCACTATAGGGATCCTTCGCATCCGGCACGATGGCTAGGACACCCCGATGAATTCCCTTTAGTGAGGGTT
The optimal secondary structure in dot-bracket notation: .....(((((((.(((((((((...((((......))))...)))).............))))).)))))))....
The centroid secondary structure in dot-bracket notation: .....(((((((.(((((....(((..(((.((......))..))).....))).....))))).)))))))....
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_1106 Description SE52
Aptamer chemistry DNA Length 76 nt
GC content 52.6% Molecular weight 23,369.95 Da
Molarity of 1 μg/μl solution 42.79 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Target detection
Sequence TACGACTCACTATAGGGATCCTTCGCATCCGGCACGATGGCTAGGACACCCCGATGAATTCCCTTTAGTGAGGGTT
Applications Capture, detect or remove S. epidermidis contaminant from platelet concentrates
Target information
Type Detail Type Detail
ATCC ID 14990 Cell name Staphylococcus epidermidis (Winslow and Winslow) Evans
Category Bacteria Organism N/A
Product type N/A Cell type N/A
Morphology N/A Tissue N/A
Disease N/A Product format Freeze-dried
Antigen expression N/A Genes expressed N/A
Cell description Staphylococcus epidermidis strain Fussel was isolated from a nose. It has applications in efficacy testing, inhibition testing, and quality control.
Application(s) Media testing; Quality control
Activity data

No relevant experimental diagram

 Interaction ID 1162
Target type Cell
Target unique ID 14990
Activity N/A
Binding Conditions/Buffer

PBS containing 1% BSA and 0.05% Tween 20
Assay

N/A
PubMed ID 30477331
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_1104 DNA TACGACTCACTATAGGGATCCCCCCGAGTGAAGAGCAGGACAGCGGGACAGCGTCGAATTCCCTTTAGTGAGGGTT 75.00%
Apta_1102 DNA TACGACTCACTATAGGGATCCGTGACTGTACGGGCTCAGTCGTTACTTGAGAGTTGAATTCCCTTTAGTGAGGGTT 73.68%
Apta_1103 DNA TACGACTCACTATAGGGATCCACCTATGGCAGATTGAGCCCAAGGGCTGTGCAGCGAATTCCCTTTAGTGAGGGTT 73.68%
Apta_1105 DNA TACGACTCACTATAGGGATCCAATGGCACAGCGCCTGGAACGTACTCTGTACCTGGAATTCCCTTTAGTGAGGGTT 73.68%
Apta_1114 DNA TAATACGACTCACTATAGGGAGACCCAAGCCGATTTATTTTGTGCAGCTTTTGTTCCCTTTAGTGAGGGTTAATT 56.58%
Apta_932 DNA ATACGACTCACTATTAGGGATGTCCACCATATAGATCGATTTAAGTCCCTCGTTATTAATGCTAGACTACTGACTACAA 55.70%
Apta_281 DNA CCGTAATACGACTCACTATAGGGGAGCTCGGTACCGAATTCATGTTGGTAGTTGGCTTGTGTTCGTGTGTTAAGCTTTCAGAGAGGATCCTT 54.35%
Apta_412 DNA CACGACTCTCACCTCATAGCtGGTGGGGTTCCCGGGAGGGCGGCTACGGGTTCCGTAATCAGATTTGTGTCTGGTTCTGTAGACGGCTTG 53.33%
Apta_800 DNA AAGGAGCAGCGTGGAGGATATACACCGTCATCAGAGGGAGCATCTCTAGTCAGGACTGTGATGAATTAGGGTGTGTCGTCGTGGT 52.94%
Apta_993 DNA AATCCGACCACGAGAGCAGACCGACCACAGCATTATCTAAACCCATTAGTCTAGTCCTGG 52.63%
Apta_550 DNA GGTAATACGACTCACTATAGGGAGATACCAGCTTATTCAATTTTACAGAACAACCAACGTCGCTCCGGGTACTTCTTCATCGAGATAGTAAGTGCAATCT 52.00%
Apta_628 DNA ATACCAGCTTATTCAATTAGCCCGGTATTGAGGTCGATCTCTTATCCTATGGCTTGTCCCCCATGGCTCGGTTATATCCAGATAGTAAGTGCAATCT 51.55%
Apta_628 DNA ATACCAGCTTATTCAATTAGCCCGGTATTGAGGTCGATCTCTTATCCTATGGCTTGTCCCCCATGGCTCGGTTATATCCAGATAGTAAGTGCAATCT 51.55%
Apta_464 DNA GTCAGATTCCACTATAGTAGGTTGGGTAGGGTGGTCGCAGTGGATGATATGTCGTAGGGG 51.32%
Apta_615 DNA ACGAAGAAACAGGGCGCTTCGAACGAACATGGGCAGGGTGGGAAGTTTTAAAGTGGTAC 51.32%
Apta_687 DNA GGGACAGCGGAGGTCTCCCACCCACCGGCCCCTGCGGCACACCAACCTGTATGGATGCG 51.32%
Apta_1101 DNA CCGTAATACGACTCACTATAGGTATGTGACGCGCGTCAATCGCTGTCCTACCAAGCTTTGCAGAGAGGATCCTT 51.32%
Apta_1111 DNA GTGCGTCGCATGATCGCGATTAGTGCGACCATGTACGATTCTCACGACAACGACACTGTACTTGAGGACTGTCTCC 51.32%
Apta_762 DNA AGCAGAGTTCACGACCCGATAAGGGCGATGCCGATCCCTGTGGCCGTAGGGACAGTCCCGCTAGAGTTACATACCAATCGTCGCAG 51.16%
Apta_949 DNA TCCAGCACTCCACGCATAACCCCGTCCTCGGAAAGAGCGCGGGCCTGGGACGGCTACTGCCCGGATTTATGTGTTATGCGTGCGACGGTGAA 51.09%

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AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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