Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 948
Aptamer sequence: TGTGCCAAAGAGAGTGGTGGGGGGGTGGGCGGAACTCGCG
Target unique ID: Other-10
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_862 | C5S | Other | antivesicular stomatitis virus polyclonal antibodies | N/A | DPBS | 23016897 |
Structure information of aptamer
| Aptamer Sequence: | TGTGCCAAAGAGAGTGGTGGGGGGGTGGGCGGAACTCGCG |
| The optimal secondary structure in dot-bracket notation: | ...((((.......))))......(((((.....))))). |
| The centroid secondary structure in dot-bracket notation: | ...((((.......))))......(((((.....))))). |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_862 | Description | C5S |
| Aptamer chemistry | DNA | Length | 40 nt |
| GC content | 67.5% | Molecular weight | 12,604.06 Da |
| Molarity of 1 μg/μl solution | 79.34 μM | Number of G-quadruplexes | 2 |
| G-Score | 21 | Function | Targeted therapy |
| Sequence | TGTGCCAAAGAGAGTGGTGGGGGGGTGGGCGGAACTCGCG | ||
| Applications | Shielding Virus from Neutralizing Antibodies | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-10 | Name | antivesicular stomatitis virus polyclonal antibodies |
Activity data
|
No relevant experimental diagram |
Interaction ID | 948 |
| Target type | Other | |
| Target unique ID | Other-10 | |
| Activity | N/A | |
| Binding Conditions/Buffer | DPBS |
|
| Assay | N/A |
|
| PubMed ID | 23016897 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_255 | DNA | TAGCGATACTGCGTGGGTTGGGGCGGGTAGGGCCAGCAGTCTCGT | |
| Apta_71 | DNA | GGCGAGTAGGTTGGTGTGGTTGGGGCTCGCC | |
| Apta_706 | DNA | CCGGCCAAGGGTGGGAGGGAGGGGGCCGG | |
| Apta_751 | DNA | GGTCGCAGATGGATTAAGTATGTGGGTGGGGGGGTGGAAGTTAAT | |
| Apta_69 | DNA | AGCGAGTAGGTTGGTGTGGTTGGGGCTCGCT | |
| Apta_831 | DNA | CCGCCCAGCGGGGGTAGGGCCGGACGTAGGAGGAGCTGCG | |
| Apta_1094 | DNA | GGAATCGTGGGTGGTAGGGTAGGGGATGCA | |
| Apta_1205 | DNA | GGCAGGTGGTGTTGGTTGGTTGTGCGTGGAGTTGG | |
| Apta_940 | DNA | TGTGCGGGGGAGGGGAGTGGCGCTGTTGGTGCGGGTATAGCGCGTGGTGT | |
| Apta_941 | DNA | CGGGTGCCTTAAAGTGTAGGTGGGAGGGGGATGATTATGTACGATCAAGT | |
| Apta_942 | DNA | AGTGGGTAAGGTCTGGTGGATTGTGGACGGGGGGCGGGGCAGTGGCTTGA | |
| Apta_745 | DNA | GGTTGCATGCCGTGGGGAGGGGGGTGGGTTTTATAGCGTACTCAG | |
| Apta_747 | DNA | TGGGGTTATTAATTTTGGGTGGGGGGGAAGATGTAGCATCCGACG | |
| Apta_750 | DNA | ATGCGAACAGGTGGGTGGGTTGGGTGGATTGTTCGGCTTCTTGAT | |
| Apta_15 | DNA | TGAGGGGGGGGGAGGGCGGGGCTGC | |
| Apta_19 | DNA | TGAGGGGGGGGGAGGTCGGGCCTGC | |
| Apta_20 | DNA | AGAGGGGGGGGTGGGGGTGGCCTGC | |
| Apta_25 | DNA | TGTGGGGGTGGTTGGGCGGGGCTGC | |
| Apta_46 | DNA | CGGGTGGGAGTTGTGGGGGGGGGTGGGAGGGTT | |
| Apta_70 | DNA | AGGTCGTAGGTTGGTGTGGTTGGGGCGACCT |
DEV TOOL
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