Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1159
Aptamer sequence: TACGACTCACTATAGGGATCCCCCCGAGTGAAGAGCAGGACAGCGGGACAGCGTCGAATTCCCTTTAGTGAGGGTT
Target unique ID: 14990
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_1104 SE42 Cell Staphylococcus epidermidis (Winslow and Winslow) Evans N/A PBS containing 1% BSA and 0.05% Tween 20 30477331
Structure information of aptamer
Aptamer Sequence: TACGACTCACTATAGGGATCCCCCCGAGTGAAGAGCAGGACAGCGGGACAGCGTCGAATTCCCTTTAGTGAGGGTT
The optimal secondary structure in dot-bracket notation: .....(((((((.(((((......(((((.....((......))......)).)))...))))).)))))))....
The centroid secondary structure in dot-bracket notation: .....(((((((.(((((.........................................))))).)))))))....
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_1104 Description SE42
Aptamer chemistry DNA Length 76 nt
GC content 55.3% Molecular weight 23,518.06 Da
Molarity of 1 μg/μl solution 42.52 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Target detection
Sequence TACGACTCACTATAGGGATCCCCCCGAGTGAAGAGCAGGACAGCGGGACAGCGTCGAATTCCCTTTAGTGAGGGTT
Applications Capture, detect or remove S. epidermidis contaminant from platelet concentrates
Target information
Type Detail Type Detail
ATCC ID 14990 Cell name Staphylococcus epidermidis (Winslow and Winslow) Evans
Category Bacteria Organism N/A
Product type N/A Cell type N/A
Morphology N/A Tissue N/A
Disease N/A Product format Freeze-dried
Antigen expression N/A Genes expressed N/A
Cell description Staphylococcus epidermidis strain Fussel was isolated from a nose. It has applications in efficacy testing, inhibition testing, and quality control.
Application(s) Media testing; Quality control
Activity data

No relevant experimental diagram

 Interaction ID 1159
Target type Cell
Target unique ID 14990
Activity N/A
Binding Conditions/Buffer

PBS containing 1% BSA and 0.05% Tween 20
Assay

N/A
PubMed ID 30477331
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_1103 DNA TACGACTCACTATAGGGATCCACCTATGGCAGATTGAGCCCAAGGGCTGTGCAGCGAATTCCCTTTAGTGAGGGTT 75.00%
Apta_1106 DNA TACGACTCACTATAGGGATCCTTCGCATCCGGCACGATGGCTAGGACACCCCGATGAATTCCCTTTAGTGAGGGTT 75.00%
Apta_1102 DNA TACGACTCACTATAGGGATCCGTGACTGTACGGGCTCAGTCGTTACTTGAGAGTTGAATTCCCTTTAGTGAGGGTT 73.68%
Apta_1105 DNA TACGACTCACTATAGGGATCCAATGGCACAGCGCCTGGAACGTACTCTGTACCTGGAATTCCCTTTAGTGAGGGTT 71.05%
Apta_1114 DNA TAATACGACTCACTATAGGGAGACCCAAGCCGATTTATTTTGTGCAGCTTTTGTTCCCTTTAGTGAGGGTTAATT 56.58%
Apta_281 DNA CCGTAATACGACTCACTATAGGGGAGCTCGGTACCGAATTCATGTTGGTAGTTGGCTTGTGTTCGTGTGTTAAGCTTTCAGAGAGGATCCTT 54.35%
Apta_550 DNA GGTAATACGACTCACTATAGGGAGATACCAGCTTATTCAATTTTACAGAACAACCAACGTCGCTCCGGGTACTTCTTCATCGAGATAGTAAGTGCAATCT 54.00%
Apta_336 DNA CATGCTTCCCCAGGGAGATGACCGGGGCGTACACCGTCGCGGCACATGTCTGAATGCGTTTAGTCTCTGTGG 53.95%
Apta_888 DNA GGCGACCCCCGGGCTACCAGACAATGTACGCAGCAAGAGTGACGGTCGTACCTCGGAGTC 53.95%
Apta_412 DNA CACGACTCTCACCTCATAGCtGGTGGGGTTCCCGGGAGGGCGGCTACGGGTTCCGTAATCAGATTTGTGTCTGGTTCTGTAGACGGCTTG 53.33%
Apta_931 DNA ATACGACTCACTATTAGGGACCACATAAACATGCATCGCTCAATAACGGGATATTGTTGTGCTAGACTACTGACTACAA 53.16%
Apta_951 DNA CACCTAATACGACTCACTATAGCGGATCCGAGGGGGTAGCGGGTGGGCCGGTGGATGCGGGGCGCCGGCGCCTGGCTCGAACAAGCTTGC 52.22%
Apta_949 DNA TCCAGCACTCCACGCATAACCCCGTCCTCGGAAAGAGCGCGGGCCTGGGACGGCTACTGCCCGGATTTATGTGTTATGCGTGCGACGGTGAA 52.17%
Apta_932 DNA ATACGACTCACTATTAGGGATGTCCACCATATAGATCGATTTAAGTCCCTCGTTATTAATGCTAGACTACTGACTACAA 51.90%
Apta_800 DNA AAGGAGCAGCGTGGAGGATATACACCGTCATCAGAGGGAGCATCTCTAGTCAGGACTGTGATGAATTAGGGTGTGTCGTCGTGGT 51.76%
Apta_615 DNA ACGAAGAAACAGGGCGCTTCGAACGAACATGGGCAGGGTGGGAAGTTTTAAAGTGGTAC 51.32%
Apta_684 DNA GGCGGACCAAGGGGACACCACAGATGAATGTACAGTACCATGTTACTGCGCCCGTAGGTG 51.32%
Apta_918 DNA TTTACTTATTCAATTCCCGTGGGAAGGCTATAGAGGGGCCAGTCTATGAATAAGTTT 51.32%
Apta_988 DNA AAGGATGACTGACGACGATGGGAATGGAGAGGAAGGGGATATAGGTATGTTGGATGTAG 51.32%
Apta_1048 DNA ATACGGGAGCCAACACCACCTGCGGAAAATCAACAACGACACACGCCACGATTCAGAGCAGGTGTGACGGAT 51.32%

ABOUT

AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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