Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 951
Aptamer sequence: CTCCTCTGACTGTAACCACGTGTGCCAAAGAGAGTGGTGGGGGGGTGGGCGGAACTCGCGGCATAGGTAGTCCAGAAGCC
Target unique ID: Other-10
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_865 C5L Other antivesicular stomatitis virus polyclonal antibodies N/A DPBS 23016897
Structure information of aptamer
Aptamer Sequence: CTCCTCTGACTGTAACCACGTGTGCCAAAGAGAGTGGTGGGGGGGTGGGCGGAACTCGCGGCATAGGTAGTCCAGAAGCC
The optimal secondary structure in dot-bracket notation: ((((((........(((((..............)))))))))))(((((.....)))))(((...((....))....)))
The centroid secondary structure in dot-bracket notation: ..............(((((..............))))).....................(((...((....))....)))
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_865 Description C5L
Aptamer chemistry DNA Length 80 nt
GC content 61.3% Molecular weight 24,891.89 Da
Molarity of 1 μg/μl solution 40.17 μM Number of G-quadruplexes 2
G-Score 21 Function Targeted therapy
Sequence CTCCTCTGACTGTAACCACGTGTGCCAAAGAGAGTGGTGGGGGGGTGGGCGGAACTCGCGGCATAGGTAGTCCAGAAGCC
Applications Shielding Virus from Neutralizing Antibodies
Target information
Type Detail Type Detail
Target ID Other-10 Name antivesicular stomatitis virus polyclonal antibodies
Activity data

No relevant experimental diagram

 Interaction ID 951
Target type Other
Target unique ID Other-10
Activity N/A
Binding Conditions/Buffer

DPBS
Assay

N/A
PubMed ID 23016897
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_864 DNA CTCCTCTGACTGTAACCACGACTAGGACGCTTGGGAGGGGGGGTGGGGTGTCCGGTCGCGGCATAGGTAGTCCAGAAGCC 77.50%
Apta_863 DNA CTCCTCTGACTGTAACCACGCCCAGAAACAGCACCCTTACATCGACTGGACCTTCCGCGGCATAGGTAGTCCAGAAGCC 70.00%
Apta_867 DNA CTCCTCTGACTGTAACCACGCCACCGAGCCTACCACATGTGACATCCCAGGACATAGCTGGCATAGGTAGTCCAGAAGCC 67.50%
Apta_866 DNA CTCCTCTGACTGTAACCACGACCGCCTTCCACCGTTCTCCACCACCCCTCAAACAACCCTGCATAGGTAGTCCAGAAGCC 65.00%
Apta_1082 DNA GGCTGGTCCGCTGGGAACAAGGGCGGGAGGGAGGGTGTGGGTGCGACAAGCGGACCAGCC 55.00%
Apta_667 DNA GCGGCGGTACCAGGTCAAAGGTGGGTGAGGGGACGCCAAGAGTCCCCGCGGTTACATAGAG 53.75%
Apta_31 DNA ATACCAGTCTATTCAATTGGGCCCGTCCGTATGGTGGGTGTGCTGGCCAGATAGTATGTGCAATCA 52.50%
Apta_464 DNA GTCAGATTCCACTATAGTAGGTTGGGTAGGGTGGTCGCAGTGGATGATATGTCGTAGGGG 52.50%
Apta_1071 DNA TTGAAGTGACTCCGCACTGGGTGGGTGGGAGGGTCGTGCGGCTGGTCATAGCAGGGT 52.50%
Apta_1229 DNA CACGGGCAGAGGGATAGGTTGTTGACGGGGCTGGTGGGTGGGTGCGCTCGCGCTATCGTGG 52.50%
Apta_951 DNA CACCTAATACGACTCACTATAGCGGATCCGAGGGGGTAGCGGGTGGGCCGGTGGATGCGGGGCGCCGGCGCCTGGCTCGAACAAGCTTGC 52.22%
Apta_584 DNA GTACCAGCTTATTCAATTACACGGACAGAGGGTAGCGGCTCTGCGCATTGAGTTGCTGCGGGCTGAAGCGCGGTACATGGGAGATAGTATGTTCATCAG 51.52%
Apta_78 DNA ATCTCGACTAGTCATAGGGGGCGCGAACATACGCGGTTGGTGTGGTTGGCTGACAATACTCGT 51.25%
Apta_1011 DNA GCTGTGTGACTCCTGCAATGGTAGCGGGTAGGGGAGGGAGGGTGAATGGAGGATGTTCATGGCAGCTGTATCTTGTCTCC 51.25%
Apta_1099 DNA ATCCATTGCCACTGACTACCAGCCGGGTGGGTGGGGGGGTTTGCTGGTATCGCATTGTGCGAAGTCAGTCGGTCGTTAGT 51.25%
Apta_151 DNA GCAATGGTACGGTACTTCCGCGGTCCGGGGTGGGTGGGTGGTGGGGGGTGCGGGGGGGCGGCCGCAAAAGTGCACGCTACTTTGCTAA 51.14%
Apta_949 DNA TCCAGCACTCCACGCATAACCCCGTCCTCGGAAAGAGCGCGGGCCTGGGACGGCTACTGCCCGGATTTATGTGTTATGCGTGCGACGGTGAA 51.09%
Apta_587 DNA GGAATGGATCCACATCCATGGATGGGCAATGCGGGGTGGAGAATGGTTGCCGCACTTCGGCTTCACTGCAGACTTGACGAAGCTT 50.59%
Apta_33 DNA GCGGTAAACTGCGTCCGAAGGGGCTGCAGTGACCCGAATGGGTCCGCCGCGAAGCG 50.00%
Apta_288 DNA ATCCAGAGTGACGCAGCATTTCATCGGGTCCAAAAGGGGCTGCTCGGGATTGCGGATATGGACACGT 50.00%

ABOUT

AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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