Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1065
Aptamer sequence: ATGACGGGGGTCTAGGCAAGTAATAACGGGGGCAAGCTTTTCTATCTCGTTCTAGGGTA
Target unique ID: Other-42
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_982 | BC1 | Other | beta-crosslap (BC) | 69.34 nM | 2 mM MgCl2, 50 mM Tris (pH 7.5) and 150 mM NaCl in distilled water | 33379043 |
Structure information of aptamer
| Aptamer Sequence: | ATGACGGGGGTCTAGGCAAGTAATAACGGGGGCAAGCTTTTCTATCTCGTTCTAGGGTA |
| The optimal secondary structure in dot-bracket notation: | ..(((((((....((((..((..........))..)))).....)))))))........ |
| The centroid secondary structure in dot-bracket notation: | ..(((((((....((((..((..........))..)))).....)))))))........ |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_982 | Description | BC1 |
| Aptamer chemistry | DNA | Length | 59 nt |
| GC content | 49.2% | Molecular weight | 18,336.75 Da |
| Molarity of 1 μg/μl solution | 54.54 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Aptasensor |
| Sequence | ATGACGGGGGTCTAGGCAAGTAATAACGGGGGCAAGCTTTTCTATCTCGTTCTAGGGTA | ||
| Applications | Binding to target proteins | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-42 | Name | beta-crosslap (BC) |
Activity data
 |
Interaction ID | 1065 |
| Target type | Other | |
| Target unique ID | Other-42 | |
| Activity | 69.34 nM | |
| Binding Conditions/Buffer | 2 mM MgCl2, 50 mM Tris (pH 7.5) and 150 mM NaCl in distilled water |
|
| Assay | Determination of affinity/dissociation constant (Kd) of from the saturation binding curve |
|
| PubMed ID | 33379043 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_109 | DNA | AGCAGCACAGAGGTCAGATGTGCGACCACCTGGATAGACGAGGGTAGTAAGGAGTGTGTTCCTATGCGTGCTACCGTGA | |
| Apta_109 | DNA | AGCAGCACAGAGGTCAGATGTGCGACCACCTGGATAGACGAGGGTAGTAAGGAGTGTGTTCCTATGCGTGCTACCGTGA | |
| Apta_341 | DNA | TCGGGGTTTGGGGGTTCGGGGTCGGTTCGGTTTCTTCTAATGGA | |
| Apta_103 | DNA | AGCAGCACAGAGGTCAGATGCATCGCATTATTCGCGGCCGGCCAACGAGAGTATGTTTCTCCTATGCGTGCTACCGTGAA | |
| Apta_103 | DNA | AGCAGCACAGAGGTCAGATGCATCGCATTATTCGCGGCCGGCCAACGAGAGTATGTTTCTCCTATGCGTGCTACCGTGAA | |
| Apta_48 | DNA | ACTGGGCAGATTAACGGTCCTATATTTTCGGTTCTGGAAA | |
| Apta_1174 | DNA | ATGAGAGCGTCGGTGTGGTAAGTATGATATCGGTGTTTATGGTGTCTGTCTTCATACTCTTGCTGTAGGAGGGTGCGGAAGTA | |
| Apta_107 | DNA | AGCAGCACAGAGGTCAGATGTTCATTTCAGTTGACCGATAGCATTGAGCAATGATCTATTCCTATGCGTGCTACCGTGAA | |
| Apta_107 | DNA | AGCAGCACAGAGGTCAGATGTTCATTTCAGTTGACCGATAGCATTGAGCAATGATCTATTCCTATGCGTGCTACCGTGAA | |
| Apta_178 | DNA | AGCAGCACAGAGGTCAGATGCGGTATGCTGGGTCATCTAACTGGGGATATTCTGATATTGCCTATGCGTGCTACCGTGAA | |
| Apta_526 | DNA | ATACGGGAGCCAACACCAAGTAACACACGCGGACCAGAAATACATCCCCCCGTAGAGCAGGTGTGACGGAT | |
| Apta_524 | DNA | ATCCGTCACACCTGCTCTGGCATTAGTATTCCATAGCCGGCCAAGTCTATGTAGTGGTGTTGGCTCCCGTAT | |
| Apta_896 | DNA | ATACGGGAGCCAACACCATAAGTCTAAAAAACTGGGAGTAAACACAATGTGTATAGAGCAGGTGTGACGGAT | |
| Apta_904 | DNA | ATACGGGAGCCAACACCAGACGGTAAATAAAGTCAGTATCGAGTACTCTATTCGAGAGCAGGTGTGACGGAT | |
| Apta_391 | DNA | ACCGTGGAGGATAGTTCGGTGGCTGTTCAGGGTCTCCTCCACGGT | |
| Apta_487 | DNA | CGGGGAGTTGGGAGGGGGGGCAAAGCCTGTGTATTTATCTTCTGT | |
| Apta_729 | DNA | AACACCGTGGAGGATAGTTCGGTGGCTGTTCAGGGTCTCCTCCCGGTG | |
| Apta_795 | DNA | CGCAGCAAGGAGATTCGAGGGGGAAGGTTTGTTATAGGGGTTAATGGA | |
| Apta_830 | DNA | GACGGTGGCAGGGAAAGGGGTCGGGCATATGGCGGAGGGG | |
| Apta_879 | DNA | GGGGGGGTGAGACATCGGGCATGTTCATGGGTGGGGGGTA |
DEV TOOL
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