AptaDB: Result

Interaction ID: 906

Aptamer sequence: TCCCACGATCTCATTAGTCTGTGGATAAGCGTGGGACGTCTATGA

Target unique ID: 35556

Aptamer ID	Aptamer descriptor	Target chemistry	Target name	Affinity	Binding Conditions/Buffer	PubMed ID
Apta_820	SA31	Cell	Staphylococcus aureus	82.86 nM	0.1 mg/ml salmon sperm DNA (0.1 mg/ml tRNA, 1% BSA, 1% PBS, 0.05% (v/v) Tween-20	19498077

Aptamer Sequence:	TCCCACGATCTCATTAGTCTGTGGATAAGCGTGGGACGTCTATGA
The optimal secondary structure in dot-bracket notation:	((((((((((.(((......))))))...))))))).........
The centroid secondary structure in dot-bracket notation:	((((((((((.(((......))))))...))))))).........

The MFE structure

The Centroid structure

The mountain plot representation

Type	Detail	Type	Detail
Aptamer ID	Apta_820	Description	SA31
Aptamer chemistry	DNA	Length	45 nt
GC content	48.9%	Molecular weight	13,866.91 Da
Molarity of 1 μg/μl solution	72.11 μM	Number of G-quadruplexes	No QGRS found
G-Score	N/A	Function	Target detection
Sequence	TCCCACGATCTCATTAGTCTGTGGATAAGCGTGGGACGTCTATGA
Applications	Detection of Staphylococcus aureus

Type	Detail	Type	Detail
ATCC ID	35556	Cell name	Staphylococcus aureus
Category	Bacteria	Organism	N/A
Product type	N/A	Cell type	N/A
Morphology	N/A	Tissue	N/A
Disease	N/A	Product format	Frozen
Antigen expression	N/A	Genes expressed	N/A
Cell description	Restriction-deficient mutant derived from strain NCTC 8325.
Application(s)	Bioinformatics; Molecular biology

	Interaction ID	906
	Target type	Cell
	Target unique ID	35556
	Activity	82.86 nM
	Binding Conditions/Buffer	0.1 mg/ml salmon sperm DNA (0.1 mg/ml tRNA, 1% BSA, 1% PBS, 0.05% (v/v) Tween-20
	Assay	Flow cytometry assay for the binding of aptamers with bacteria
	PubMed ID	19498077

Aptamer ID	Aptamer chemistry	Sequence	Similarity
Apta_650	DNA	GCACACCGATGGCGGTCCTGTTTAGGGGGTGTGCGTGGGGAGGTGCGGTTGC	55.77%
Apta_438	DNA	AGCCATGACGATGTCGTTACGTAGATGCAGAGACTCCTAA	55.56%
Apta_438	DNA	AGCCATGACGATGTCGTTACGTAGATGCAGAGACTCCTAA	55.56%
Apta_443	DNA	GGCCATGACGATGTCGTTACGTAGATGCAGAGACTCCTAA	55.56%
Apta_444	DNA	AGCCATTACGATGTCGTTACGTAGATGCAGAGACTCCTAA	55.56%
Apta_446	DNA	AGCCATGACGATGTCGTTACGTAGATGCATAGACTCCTAA	55.56%
Apta_476	DNA	CCTATCTTATTCGTTGCGGACTCCCCGGTCGGTATGTATG	55.56%
Apta_691	DNA	CGACGCGCGTTGGTGGTGGATGGTGTGTTACACGTGTTGT	55.56%
Apta_751	DNA	GGTCGCAGATGGATTAAGTATGTGGGTGGGGGGGTGGAAGTTAAT	55.56%
Apta_1255	DNA	GGCGCATGATCATTCGGTGGGTAAGGTGGTGGTAACGTTG	55.56%
Apta_571	DNA	ACCTGCGATAGGTAGTTTGTTTCTGTTGCCCTAGCGTCCGTCGTAACAAGTCA	54.72%
Apta_1278	DNA	CCATGATTCAACTTTACTGGTCTTGTCTTGGCTAGTCGTGTGTCATTCCCTAAGG	54.55%
Apta_1087	DNA	CTTACGACTCAGGCATTTTGCCGGGTAACGAAGTTACTGTCGTAAG	54.35%
Apta_1177	DNA	TCCTACTCGTGATATCGGTGTTTATGGTGTCTGTCTTCATGTAGGA	54.35%
Apta_142	DNA	CGCACATCAGTTTAGCAGCGCCAAAGGCGGAAGCGCA	53.33%
Apta_145	DNA	GGTGCGGTTCGTGCGGTTGTAGTACTCGTGGCCGATAGA	53.33%
Apta_220	DNA	ATCAACTCACCGTAGGTCTAGTGAGAACTTCAAGTCTACT	53.33%
Apta_445	DNA	AGCCATGACGATGTCGTTACGTAGATGTAGAGACTCCTAA	53.33%
Apta_643	DNA	ACCGATCCATCGAGTTTCTGAGAAAGGCCCGGAGAAACCGCGAGA	53.33%
Apta_937	DNA	TTGCCCACAGATCTGTGGAAGCCGAACCGCGTGCTAGTCGTG	53.33%

ABOUT