Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1158
Aptamer sequence: TACGACTCACTATAGGGATCCACCTATGGCAGATTGAGCCCAAGGGCTGTGCAGCGAATTCCCTTTAGTGAGGGTT
Target unique ID: 14990
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_1103 SE40 Cell Staphylococcus epidermidis (Winslow and Winslow) Evans N/A PBS containing 1% BSA and 0.05% Tween 20 30477331
Structure information of aptamer
Aptamer Sequence: TACGACTCACTATAGGGATCCACCTATGGCAGATTGAGCCCAAGGGCTGTGCAGCGAATTCCCTTTAGTGAGGGTT
The optimal secondary structure in dot-bracket notation: .....(((((((.(((((....(((..(((.......)))..)))(((....)))....))))).)))))))....
The centroid secondary structure in dot-bracket notation: .....(((((((.(((((....(((..(((.......)))..)))(((....)))....))))).)))))))....
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_1103 Description SE40
Aptamer chemistry DNA Length 76 nt
GC content 51.3% Molecular weight 23,474.03 Da
Molarity of 1 μg/μl solution 42.60 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Target detection
Sequence TACGACTCACTATAGGGATCCACCTATGGCAGATTGAGCCCAAGGGCTGTGCAGCGAATTCCCTTTAGTGAGGGTT
Applications Capture, detect or remove S. epidermidis contaminant from platelet concentrates
Target information
Type Detail Type Detail
ATCC ID 14990 Cell name Staphylococcus epidermidis (Winslow and Winslow) Evans
Category Bacteria Organism N/A
Product type N/A Cell type N/A
Morphology N/A Tissue N/A
Disease N/A Product format Freeze-dried
Antigen expression N/A Genes expressed N/A
Cell description Staphylococcus epidermidis strain Fussel was isolated from a nose. It has applications in efficacy testing, inhibition testing, and quality control.
Application(s) Media testing; Quality control
Activity data

No relevant experimental diagram

 Interaction ID 1158
Target type Cell
Target unique ID 14990
Activity N/A
Binding Conditions/Buffer

PBS containing 1% BSA and 0.05% Tween 20
Assay

N/A
PubMed ID 30477331
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_1105 DNA TACGACTCACTATAGGGATCCAATGGCACAGCGCCTGGAACGTACTCTGTACCTGGAATTCCCTTTAGTGAGGGTT 76.32%
Apta_1104 DNA TACGACTCACTATAGGGATCCCCCCGAGTGAAGAGCAGGACAGCGGGACAGCGTCGAATTCCCTTTAGTGAGGGTT 75.00%
Apta_1106 DNA TACGACTCACTATAGGGATCCTTCGCATCCGGCACGATGGCTAGGACACCCCGATGAATTCCCTTTAGTGAGGGTT 73.68%
Apta_1102 DNA TACGACTCACTATAGGGATCCGTGACTGTACGGGCTCAGTCGTTACTTGAGAGTTGAATTCCCTTTAGTGAGGGTT 69.74%
Apta_1114 DNA TAATACGACTCACTATAGGGAGACCCAAGCCGATTTATTTTGTGCAGCTTTTGTTCCCTTTAGTGAGGGTTAATT 59.21%
Apta_550 DNA GGTAATACGACTCACTATAGGGAGATACCAGCTTATTCAATTTTACAGAACAACCAACGTCGCTCCGGGTACTTCTTCATCGAGATAGTAAGTGCAATCT 56.00%
Apta_932 DNA ATACGACTCACTATTAGGGATGTCCACCATATAGATCGATTTAAGTCCCTCGTTATTAATGCTAGACTACTGACTACAA 55.70%
Apta_281 DNA CCGTAATACGACTCACTATAGGGGAGCTCGGTACCGAATTCATGTTGGTAGTTGGCTTGTGTTCGTGTGTTAAGCTTTCAGAGAGGATCCTT 55.43%
Apta_931 DNA ATACGACTCACTATTAGGGACCACATAAACATGCATCGCTCAATAACGGGATATTGTTGTGCTAGACTACTGACTACAA 54.43%
Apta_800 DNA AAGGAGCAGCGTGGAGGATATACACCGTCATCAGAGGGAGCATCTCTAGTCAGGACTGTGATGAATTAGGGTGTGTCGTCGTGGT 54.12%
Apta_464 DNA GTCAGATTCCACTATAGTAGGTTGGGTAGGGTGGTCGCAGTGGATGATATGTCGTAGGGG 53.95%
Apta_448 DNA TAACTCACTCCATACTCACTTGCTGATTCGCCAACAACACACCCTTAAACAGTCCC 52.63%
Apta_662 DNA GGCGCCAAACAGGACCACCATGACAATTACCCATACCACCTCATTATGCCCCATCTCCGC 52.63%
Apta_626 DNA ATACCAGCTTATTCAATTGGTGGTAGGATGGGCTCGATCGAGGTCTTCAGTCGGCTCGGTTTAGTTTATGTTCTCCTGTAGATAGTAAGTGCAATCT 52.58%
Apta_626 DNA ATACCAGCTTATTCAATTGGTGGTAGGATGGGCTCGATCGAGGTCTTCAGTCGGCTCGGTTTAGTTTATGTTCTCCTGTAGATAGTAAGTGCAATCT 52.58%
Apta_953 DNA TCACCTCATACGACTCACTATAGCGGATCCGAGCCGGGGTGTTCTGTTGGCGGGGGCGGTGGGCGGGCTGGCTCGAACAAGCTTGC 52.33%
Apta_1015 DNA ATACCAGCTTATTCAATTGACCCGTTTCGTTCCCTCTGGGAAGTTTAGCCCAGTTGCCTGGGCGATACCAAGATAGTAAGTGCAATCT 52.27%
Apta_951 DNA CACCTAATACGACTCACTATAGCGGATCCGAGGGGGTAGCGGGTGGGCCGGTGGATGCGGGGCGCCGGCGCCTGGCTCGAACAAGCTTGC 52.22%
Apta_791 DNA ATCGTCTGCTCCGTCCAATATATCAAAGGCGAATTTTGTCAAGGTGTTAAACGATAGTCCCTACCTTTGGTGTGAGGTCGTGC 51.81%
Apta_67 DNA AGATGCCTGTCGAGCATGCTGTTGTGGTAGGGTTAGGGATGGTAGCGGTTGTAGCTAAACTGCTTTGTCGACGGG 51.32%

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AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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