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Primary-literature peptidemedium evidence

PEPDIA-PLP-001978

M104

Aliases: M104

Normalized sequence

MEAFIVSAFKHQAEGFKLHYK

21 amino acids

Release PepDiana-V1-20260620

85

Activity records

1

Source papers

82

Positive

3

Negative / threshold

Versioned scientific descriptors

Physicochemical properties and standard representations

calculated sequence and structure

Reported properties

No separate physicochemical property was reported in the primary-literature identity record. PepDiana release values are shown as computed properties.

Computed properties

physchem-20260620

Molecular weight

2481.8671 Da

Molecular formula

C117H173N29O29S

Theoretical pI

8.2311

Net charge at pH 7

0.6763

GRAVY

-0.1381

Instability index

8.0476

Aromaticity

0.1905

Topological polar surface area

938.89 Ų

cLogP

-4.7309

Hydrogen-bond donors

32

Hydrogen-bond acceptors

33

Rotatable bonds

83

Method: PepDiana sequence/structure descriptor pipeline

Tool: Biopython+RDKit · Biopython 1.85; RDKit 2024.09.6

Calculated: 2026-06-20T11:01:38.358971+00:00

Assumptions: ph=7; termini=free N-terminus and free C-terminus for simple linear peptides; stereochemistry=standard L-amino acids; smiles_length_limit=200

Sequence representations

representations-20260620

ProForma 2.0

validated simple linear

MEAFIVSAFKHQAEGFKLHYK

HELM 2.0

validated simple linear

PEPTIDE1{M.E.A.F.I.V.S.A.F.K.H.Q.A.E.G.F.K.L.H.Y.K}$$$$V2.0

Canonical SMILES

validated

CCC(C)C(NC(=O)C(Cc1ccccc1)NC(=O)C(C)NC(=O)C(CCC(=O)O)NC(=O)C(N)CCSC)C(=O)NC(C(=O)NC(CO)C(=O)NC(C)C(=O)NC(Cc1ccccc1)C(=O)NC(CCCCN)C(=O)NC(Cc1c[nH]cn1)C(=O)NC(CCC(N)=O)C(=O)NC(C)C(=O)NC(CCC(=O)O)C(=O)NCC(=O)NC(Cc1ccccc1)C(=O)NC(CCCCN)C(=O)NC(CC(C)C)C(=O)NC(Cc1c[nH]cn1)C(=O)NC(Cc1ccc(O)cc1)C(=O)NC(CCCCN)C(=O)O)C(C)C

Isomeric SMILES

validated

CC[C@H](C)[C@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@@H](N)CCSC)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](C)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCCN)C(=O)O)C(C)C

Paper-level observations

Experimental evidence grouped by activity

Antimicrobial 82 records

PMC12936117

82 observations
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 2: Isolate Kp5, Meropenem+Peptide MBIC (µg/mL) = 128, [Peptide] (µg/mL) = 50, 100, and 200.

Measure
other
Value
128 (MBIC)
Target
Klebsiella pneumoniae
Assay
Crystal violet staining (biofilm inhibition assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 2: Isolate Kp6, Meropenem+Peptide MBIC (µg/mL) = 128, [Peptide] (µg/mL) = 200.

Measure
other
Value
128 (MBIC)
Target
Klebsiella pneumoniae
Assay
Crystal violet staining (biofilm inhibition assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 2: Isolate Kp33, Meropenem+Peptide MBIC (µg/mL) = 128, [Peptide] (µg/mL) = 100.

Measure
other
Value
128 (MBIC)
Target
Klebsiella pneumoniae
Assay
Crystal violet staining (biofilm inhibition assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 2: Isolate Kp112, Meropenem+Peptide MBIC (µg/mL) = 256, [Peptide] (µg/mL) = 200.

Measure
other
Value
256 (MBIC)
Target
Klebsiella pneumoniae
Assay
Crystal violet staining (biofilm inhibition assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 2: Isolate Kp121, Meropenem+Peptide MBIC (µg/mL) = 256, [Peptide] (µg/mL) = 200.

Measure
other
Value
256 (MBIC)
Target
Klebsiella pneumoniae
Assay
Crystal violet staining (biofilm inhibition assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 3: Isolate Kp5, Meropenem+Peptide MBEC (µg/mL) = 1024. Table footnote: The concentration of peptide was 200 (µg/mL).

Measure
other
Value
1024 (MBEC)
Target
Klebsiella pneumoniae
Assay
MTT assay (biofilm eradication assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 3: Isolate Kp33, Meropenem+Peptide MBEC (µg/mL) = 1024. Table footnote: The concentration of peptide was 200 (µg/mL).

Measure
other
Value
1024 (MBEC)
Target
Klebsiella pneumoniae
Assay
MTT assay (biofilm eradication assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 3: Isolate Kp6, Meropenem+Peptide MBEC (µg/mL) = 256. Table footnote: The concentration of peptide was 200 (µg/mL).

Measure
other
Value
256 (MBEC)
Target
Klebsiella pneumoniae
Assay
MTT assay (biofilm eradication assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 3: Isolate Kp112, Meropenem+Peptide MBEC (µg/mL) = 2048. Table footnote: The concentration of peptide was 200 (µg/mL).

Measure
other
Value
2048 (MBEC)
Target
Klebsiella pneumoniae
Assay
MTT assay (biofilm eradication assay)
Source publication
AntimicrobialAnti-BiofilmPositive observation
Record detail

Table 3: Isolate Kp121, Meropenem+Peptide MBEC (µg/mL) = 2048. Table footnote: The concentration of peptide was 200 (µg/mL).

Measure
other
Value
2048 (MBEC)
Target
Klebsiella pneumoniae
Assay
MTT assay (biofilm eradication assay)
Source publication
AntimicrobialAnti-Gram-Negative / threshold
Record detail

Notably, the peptide did not enhance meropenem’s activity when tested against the ten carbapenemase-negative (presumably blaOXA-48 negative) isolates.

Measure
MIC
Value
no enhancement
Target
Klebsiella pneumoniae
Assay
Broth microdilution (checkerboard assay)
Source publication
AntimicrobialAnti-Gram-Negative / threshold
Record detail

The peptide exhibited no intrinsic antibacterial activity when used alone against the bacteria, either in planktonic or in the biofilm state of living.

Measure
MIC
Value
no intrinsic antibacterial activity
Target
Klebsiella pneumoniae
Assay
Broth microdilution (checkerboard assay)
Source publication
Toxicity 3 records

PMC12936117

3 observations
ToxicityCytotoxicPositive observation
Record detail

Cells treated with 200 µg/mL of peptide M104 for 24 h maintained a mean cell viability of 99.6%, which was not statistically different from the untreated control (p-value > 0.05).

Measure
cell_viability
Value
99.6%
Target
HDFa
Assay
MTT assay
Source publication
ToxicityCytotoxicPositive observation
Record detail

Following 48 h of incubation with 200 µg/mL peptide M104, the mean cell viability significantly reduced to 90.1% (p-value < 0.05) compared to the untreated control.

Measure
cell_viability
Value
90.1%
Target
HDFa
Assay
MTT assay
Source publication
ToxicityHemolyticNegative / threshold
Record detail

In the hemolysis assay, peptide M104 showed no detectable hemolytic activity at the highest concentration tested (200 µg/mL).

Measure
hemolysis
Value
no detectable hemolytic activity
Target
Not reported by source
Assay
Hemolysis assay (hemoglobin release at 540 nm)
Source publication

Citation and release provenance

Cite this identity as PepDiana record PEPDIA-PLP-001978, release PepDiana-V1-20260620. Experimental observations retain their paper, mention, and activity-record identifiers.

Record updated: 2026-06-22T07:14:26.229247+00:00