Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 996
Aptamer sequence: ATCCGTCACACCTGCTCTTGTAGGGTTCCCACCCAATTCAGTTCCGTTAAACCATGGTGTTGGCTCCCGTAT
Target unique ID: Other-27
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_534 | APM13 | Other | β-Casomorphin-7 (BCM-7) | 36.33 nM | 20 mM Tris HCl, 10.0 mM EDTA, 3.5 M Urea, and 0.02% Tween 20, pH 8.0 | 25712869 |
Structure information of aptamer
| Aptamer Sequence: | ATCCGTCACACCTGCTCTTGTAGGGTTCCCACCCAATTCAGTTCCGTTAAACCATGGTGTTGGCTCCCGTAT |
| The optimal secondary structure in dot-bracket notation: | ....(((((((((((....)))((((....)))).....................)))).))))........ |
| The centroid secondary structure in dot-bracket notation: | ....(((.(((((((....)))((((....)))).....................))))..)))........ |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_534 | Description | APM13 |
| Aptamer chemistry | DNA | Length | 72 nt |
| GC content | 51.4% | Molecular weight | 21,962.04 Da |
| Molarity of 1 μg/μl solution | 45.53 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Aptasensor |
| Sequence | ATCCGTCACACCTGCTCTTGTAGGGTTCCCACCCAATTCAGTTCCGTTAAACCATGGTGTTGGCTCCCGTAT | ||
| Applications | Recognition of aflflatoxin M1 | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-27 | Name | β-Casomorphin-7 (BCM-7) |
Activity data
|
No relevant experimental diagram |
Interaction ID | 566 |
| Target type | Molecule | |
| Target unique ID | 15558498 | |
| Activity | 58.75 nM | |
| Binding Conditions/Buffer | 20 mM Tris-HCl, 100 mM NaCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 |
|
| Assay | N/A |
|
| PubMed ID | 24984866 | |
|
No relevant experimental diagram |
Interaction ID | 996 |
| Target type | Other | |
| Target unique ID | Other-27 | |
| Activity | 36.33 nM | |
| Binding Conditions/Buffer | 20 mM Tris HCl, 10.0 mM EDTA, 3.5 M Urea, and 0.02% Tween 20, pH 8.0 |
|
| Assay | N/A |
|
| PubMed ID | 25712869 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_534 | DNA | ATCCGTCACACCTGCTCTTGTAGGGTTCCCACCCAATTCAGTTCCGTTAAACCATGGTGTTGGCTCCCGTAT | |
| Apta_535 | DNA | ATCCGTCACACCTGCTCTTGGGGTTATTACTCGTGAGATTGGGAATAGGTTACATGGTGTTGGCTCCCGTAT | |
| Apta_530 | DNA | ATCCGTCACACCTGCTCTGTGTACGCCCGTATTTACGTTCCTAGCAATTGCTATGTGGTGTTGGCTCCCGTAT | |
| Apta_511 | DNA | ATCCGTCACACCTGCTCTCAGGGGATCACATTCTTGACGGTGTGATACAGTGCCTGGTGTTGGCTCCCGTAT | |
| Apta_532 | DNA | ATCCGTCACACCTGCTCTAACTTACACATAATTCTAGGTTACATCTTGCTCATATGGTGTTGGCTCCCGTAT | |
| Apta_536 | DNA | ATCCGTCACACCTGCTCTCGAATAGAGTACTCGATACTGACTTTATTTACCGTCTGGTGTTGGCTCCCGTAT | |
| Apta_826 | DNA | ATCCGTCACACCTGCTCTGCACGGGCTCAGTTTGGCTTTGTATCCTAAGAGGGATGGTGTTGGCTCCCGTAT | |
| Apta_899 | DNA | ATCCGTCACACCTGCTCTCGAATAGAGTATTCGATACTGACTTTATTTACCGTCTGGTGTTGGCTCCCGTAT | |
| Apta_1051 | DNA | ATCCGTCACACCTGCTCTATACACATTGTGTTTACTCCCAGTTTTTTAGACTTATGGTGTTGGCTCCCGTAT | |
| Apta_523 | DNA | ATCCGTCACACCTGCTCTGACGCTGGGGTCGACCCGGAGAAATGCATTCCCCTGTGGTGTTGGCTCCCGTAT | |
| Apta_1052 | DNA | ATCCGTCACACCTGCTCTATTCCTCTGTTGAAGAACCACTTCCGGAAATAAGAGTGGTGTTGGCTCCCGTAT | |
| Apta_524 | DNA | ATCCGTCACACCTGCTCTGGCATTAGTATTCCATAGCCGGCCAAGTCTATGTAGTGGTGTTGGCTCCCGTAT | |
| Apta_529 | DNA | ATCCGTCACACCTGCTCTACACTCCGCACGATCTTTTTTAGAACGCGTACCCGTTGGTGTTGGCTCCCGTAT | |
| Apta_537 | DNA | ATCCGTCACACCTGCTCTCCTCGAACTAGTTAGACCCTCCTCCAAGTCAACTTGTGGTGTTGGCTCCCGTAT | |
| Apta_1050 | DNA | ATCCGTCACACCTGCTCTCACGTCCGTCAACCAGATTGATACTTTATCTTGTTGTGGTGTTGGCTCCCGTAT | |
| Apta_815 | DNA | CATCCGTCACACCTGCTCTGGCCACTAACATGGGGACCAGGTGGTGTTGGCTCCCGTATC | |
| Apta_906 | DNA | ATCCGTCACACCTGCTCTCCCCGGCGTCCGTTTATTAGCAGACTTTGGCGGAATTGGTGTTGGCTCCCGTAT | |
| Apta_525 | DNA | ATCCGTCACACCTGCTCTCAATCTGAAATATTGCAAGCAGTGCTCACAATTTGTTGGTGTTGGCTCCCGTAT | |
| Apta_101 | DNA | AGCAGCACAGAGGTCAGATGTGTTAGGCTGGGACACGTATTACACTTACCGTAAATATTTCCTATGCGTGCTACCGTGAA | |
| Apta_102 | DNA | AGCAGCACAGAGGTCAGATGCGTTTTTTACGGCTGGCAACGGAAGTCAGTTTATTCTTCACCTATGCGTGCTACCGTGAA |
DEV TOOL
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