AptaDB: Result

Interaction ID: 899

Aptamer sequence: TAGAGATATGACAGCGGGGAAGGTTAAGAGGCGCTAGGAG

Target unique ID: 17802

Aptamer ID	Aptamer descriptor	Target chemistry	Target name	Affinity	Binding Conditions/Buffer	PubMed ID
Apta_813	A1	Cell	Vibrio parahemolyticus	22.92 nM	50 mM Tris-HCl (pH 7.4), 5 mM KCl, 100 mM NaCl, and 1 mM MgCl2	22480209

Aptamer Sequence:	TAGAGATATGACAGCGGGGAAGGTTAAGAGGCGCTAGGAG
The optimal secondary structure in dot-bracket notation:	............((((...............)))).....
The centroid secondary structure in dot-bracket notation:	............((((...............)))).....

The MFE structure

The Centroid structure

The mountain plot representation

Type	Detail	Type	Detail
Aptamer ID	Apta_813	Description	A1
Aptamer chemistry	DNA	Length	40 nt
GC content	52.5%	Molecular weight	12,588.11 Da
Molarity of 1 μg/μl solution	79.44 μM	Number of G-quadruplexes	2
G-Score	19	Function	Target recognition
Sequence	TAGAGATATGACAGCGGGGAAGGTTAAGAGGCGCTAGGAG
Applications	Recognition of Vibrio parahemolyticus

Type	Detail	Type	Detail
ATCC ID	17802	Cell name	Vibrio parahemolyticus
Category	Bacteria	Organism	N/A
Product type	N/A	Cell type	N/A
Morphology	N/A	Tissue	N/A
Disease	N/A	Product format	Freeze-dried
Antigen expression	N/A	Genes expressed	N/A
Cell description	N/A
Application(s)	Bioinformatics; Enteric disease research; Infectious disease research

	Interaction ID	899
	Target type	Cell
	Target unique ID	17802
	Activity	22.92 nM
	Binding Conditions/Buffer	50 mM Tris-HCl (pH 7.4), 5 mM KCl, 100 mM NaCl, and 1 mM MgCl2
	Assay	Histogram values of the percent gated fluorescence intensity above library background for individual aptamers
	PubMed ID	22480209

Aptamer ID	Aptamer chemistry	Sequence	Similarity
Apta_484	DNA	CAGGGAGGGACAGGGCGGGAATTTGTATGATGGTTCGTTTGCTCG	57.78%
Apta_343	DNA	AACAGAGGGACAAACGGGGGAAGATTTGACGTCGACGAC	57.50%
Apta_795	DNA	CGCAGCAAGGAGATTCGAGGGGGAAGGTTTGTTATAGGGGTTAATGGA	56.25%
Apta_30	DNA	AGAGGGGGGGGTGGAGGGGGCTAGA	55.00%
Apta_259	DNA	GCAAGTATGAGCGCAGGAGTTAGGTCCCGTGGCGATGGGT	55.00%
Apta_519	DNA	GTATTGCGGAGGAAGGTTTTTAACCTTCGGGG	55.00%
Apta_1047	DNA	TAGTCCCAAGGCACATAAGGGCCGGAGGTCTAGCGTCAGGGATACAGAGA	54.00%
Apta_569	DNA	TGCGCATGTGAAAGGTTGCCTAACTGGACAGGGTTTAGGAGCGACTAGACACAG	53.70%
Apta_255	DNA	TAGCGATACTGCGTGGGTTGGGGCGGGTAGGGCCAGCAGTCTCGT	53.33%
Apta_746	DNA	AGAGTGGGGGGGTGGGTGGATTTGACAGGTGGCATGCTGGAGAGT	53.33%
Apta_747	DNA	TGGGGTTATTAATTTTGGGTGGGGGGGAAGATGTAGCATCCGACG	53.33%
Apta_910	DNA	TCACGTGCATGATAGACGGCGAAGCCGTCGAGTTGCTGTGTGCCGATGCACGTGA	52.73%
Apta_918	DNA	TTTACTTATTCAATTCCCGTGGGAAGGCTATAGAGGGGCCAGTCTATGAATAAGTTT	52.63%
Apta_988	DNA	AAGGATGACTGACGACGATGGGAATGGAGAGGAAGGGGATATAGGTATGTTGGATGTAG	52.54%
Apta_19	DNA	TGAGGGGGGGGGAGGTCGGGCCTGC	52.50%
Apta_26	DNA	AGGGGGGGGGGTAAGGGTGGGTAGA	52.50%
Apta_60	DNA	GGAATGAGTGCCCTGCAAGCGAGGGCTAGC	52.50%
Apta_65	DNA	CTACCGTGGTAGGGAAGGTTGGAGTGTAG	52.50%
Apta_66	DNA	TACCGTGGTAGGGAAGGTTGGAGTGTA	52.50%
Apta_162	DNA	CCGTACATACTACGTACGTACGTGAACAGAGGCAGAG	52.50%

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