Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 980
Aptamer sequence: GGCGGCCGTGAAATTTGCCAAATGCCGTCTTGGCTTTCGCCCAATGTATCCTGGGTGTTC
Target unique ID: Other-25
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_890 | Aptamer clone7 | Other | Escherichia coli (ETEC) K88 | 43 nM | 20 mmol/L HEPES, 1 mmol/L MgCl2, 1 mmol/L CaCl2 and 120 mmol/L KCl | 21627466 |
Structure information of aptamer
| Aptamer Sequence: | GGCGGCCGTGAAATTTGCCAAATGCCGTCTTGGCTTTCGCCCAATGTATCCTGGGTGTTC |
| The optimal secondary structure in dot-bracket notation: | ((((((..((........))...))))))........((((((........))))))... |
| The centroid secondary structure in dot-bracket notation: | ((((((.................))))))........((((((........))))))... |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_890 | Description | Aptamer clone7 |
| Aptamer chemistry | DNA | Length | 60 nt |
| GC content | 55.0% | Molecular weight | 18,455.79 Da |
| Molarity of 1 μg/μl solution | 54.18 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Target detection |
| Sequence | GGCGGCCGTGAAATTTGCCAAATGCCGTCTTGGCTTTCGCCCAATGTATCCTGGGTGTTC | ||
| Applications | Detection of Escherichia coli K88 | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-25 | Name | Escherichia coli (ETEC) K88 |
Activity data
|
No relevant experimental diagram |
Interaction ID | 980 |
| Target type | Other | |
| Target unique ID | Other-25 | |
| Activity | 43 nM | |
| Binding Conditions/Buffer | 20 mmol/L HEPES, 1 mmol/L MgCl2, 1 mmol/L CaCl2 and 120 mmol/L KCl |
|
| Assay | N/A |
|
| PubMed ID | 21627466 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_891 | DNA | GGAGACCGTACCATCTGTTCGTGGAAGCGCTTTGCTCGTCCATTAGCCTTGTGCTCGTGC | |
| Apta_1111 | DNA | GTGCGTCGCATGATCGCGATTAGTGCGACCATGTACGATTCTCACGACAACGACACTGTACTTGAGGACTGTCTCC | |
| Apta_913 | DNA | GGCACTTGTTTGCTCGAACGATGGTTTGTGCTTTTGTGTT | |
| Apta_1033 | DNA | CACAGGTTCCAGGTAATACCTAAGGGTATGCTCTCGCCTATTATATGGAGCAC | |
| Apta_1109 | DNA | GGTATGTGTCGTTGATCTGGATATCTATGCCTAATGCTCGTAGGCGACTGTTCGGATAGTAACGTTGACCGCATAC | |
| Apta_596 | DNA | GGTGGCTGTTGGTCGAGGCTTATTAGTGTAGTCAATGGAGGCAGGCGACG | |
| Apta_914 | DNA | CGCTCCGTTTACTCGGTCTGCTATTGGCTTGCCTTTGTTT | |
| Apta_234 | DNA | AGCAGCACAGAGGTCAGATGAAATTTTGCACTTACTTGACGTTTCCTCGATAGCCACAAGCCTATGCGTGCTACCGTGAA | |
| Apta_836 | DNA | TGAGCCCAAGCCCTGGTATGTTACAGTATGCTACCTCTACTTGAAGGTTGGTCGACGCGGGGCAGGTCTACTTTGGGATC | |
| Apta_843 | DNA | TGAGCCCAAGCCCTGGTATGTCACATCCGGGTTCTTTGCGAACGCGTTTCCGCAGTCTCAGGCAGGTCTACTTTGGGATC | |
| Apta_369 | DNA | GGCTGTTGTGAGCCTCCTCCCAGAGGGAAGACTTTAGGTTCGGTTCACGTCCCGCTTATTCTTACTCCC | |
| Apta_655 | DNA | CCTGCACCTCGTCCAGCATGCACACCGATGGCGGTCCTGTTTTACGGTAGCTTATATGCAGGGGGTGTGCGTG | |
| Apta_422 | DNA | GGGAGCTCAGAATAAACGCTCAATTCGGGAATGATTATCAAATTTATGCCCTCTGATTTCGACATGAGGCCCGGATC | |
| Apta_110 | DNA | AGCAGCACAGAGGTCAGATGGTTAGGAAGGTGAATAGGTACGACTGCAGGTCTATCGCAGCCTATGCGTGCTACCGTGAA | |
| Apta_110 | DNA | AGCAGCACAGAGGTCAGATGGTTAGGAAGGTGAATAGGTACGACTGCAGGTCTATCGCAGCCTATGCGTGCTACCGTGAA | |
| Apta_173 | DNA | AGCAGCACAGAGGTCAGATGGCAGGTTTCGACGTACAATGCTATGGAGGCTTTATGATCGCCTATGCGTGCTACCGTGAA | |
| Apta_177 | DNA | AGCAGCACAGAGGTCAGATGCCATAGGTGCCTGAATTGTCCCAAACATTCGCATGATCGACCTATGCGTGCTACCGTGAA | |
| Apta_217 | DNA | CGCCTGATTAGCGATACTCAGGCGTTGGGTGGGTGGGTGGG | |
| Apta_235 | DNA | AGCAGCACAGAGGTCAGATGTGGTTCGATGCTGCAAGGTGTTGTCATTTGGCATATGTTACCTATGCGTGCTACCGTGAA | |
| Apta_449 | DNA | CGCACTATGTTTTACGAGCCGTTTCCTCGGCAGATAGTAAGTGCG |
DEV TOOL
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