Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 956
Aptamer sequence: CCGGGGAATCTAGGGGAGGGCGGGTGGGTCAATTGAGCCG
Target unique ID: Other-10
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_870 C4S Other antivesicular stomatitis virus polyclonal antibodies N/A DPBS 23016897
Structure information of aptamer
Aptamer Sequence: CCGGGGAATCTAGGGGAGGGCGGGTGGGTCAATTGAGCCG
The optimal secondary structure in dot-bracket notation: (((.....(((...)))...)))..((.((....)).)).
The centroid secondary structure in dot-bracket notation: (((.....(((...)))...)))..((.((....)).)).
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_870 Description C4S
Aptamer chemistry DNA Length 40 nt
GC content 67.5% Molecular weight 12,564.03 Da
Molarity of 1 μg/μl solution 79.59 μM Number of G-quadruplexes 3
G-Score 64 Function Targeted therapy
Sequence CCGGGGAATCTAGGGGAGGGCGGGTGGGTCAATTGAGCCG
Applications Shielding Virus from Neutralizing Antibodies
Target information
Type Detail Type Detail
Target ID Other-10 Name antivesicular stomatitis virus polyclonal antibodies
Activity data

No relevant experimental diagram

 Interaction ID 956
Target type Other
Target unique ID Other-10
Activity N/A
Binding Conditions/Buffer

DPBS
Assay

N/A
PubMed ID 23016897
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_880 DNA GCCGCACAATCGGGTTGGGCAGGGAGGGCACGTGTGGCGC 60.00%
Apta_1189 DNA GCGGGCGGGGGGAGGGCGGCCGTGGGCTGCGAGTGGGAGG 60.00%
Apta_745 DNA GGTTGCATGCCGTGGGGAGGGGGGTGGGTTTTATAGCGTACTCAG 57.78%
Apta_681 DNA CCTGACGATCGGGTGTGGGTTGGCTTGAGG 57.50%
Apta_869 DNA ACTAGGACGCTTGGGAGGGGGGGTGGGGTGTCCGGTCGCG 57.50%
Apta_1195 DNA GGGGTTGGGGGGAGGCGGGGAATGGGGG 57.50%
Apta_1041 DNA TTGGCCCCGCGTGATCATTGAGGGGAGGAGCCGAGGCGGGTCCAAGATTG 56.00%
Apta_618 DNA GCGGCAAATCAGCATACGAGTGTACAGGGACGGGACGGGTGGGTAAAAGGTGTCGCCTCAG 55.74%
Apta_46 DNA CGGGTGGGAGTTGTGGGGGGGGGTGGGAGGGTT 55.00%
Apta_706 DNA CCGGCCAAGGGTGGGAGGGAGGGGGCCGG 55.00%
Apta_960 DNA CCCGAGGCACGAGGGGGAACGTATCGTCATGTGCCGGCCA 55.00%
Apta_1193 DNA GGGTTGGAGGTGGAGGGGAGTTGAGG 55.00%
Apta_1229 DNA CACGGGCAGAGGGATAGGTTGTTGACGGGGCTGGTGGGTGGGTGCGCTCGCGCTATCGTGG 54.10%
Apta_942 DNA AGTGGGTAAGGTCTGGTGGATTGTGGACGGGGGGCGGGGCAGTGGCTTGA 54.00%
Apta_666 DNA TCGACCTCGCGCGAGGAGGGTGGAGGGTCGTAGAGCGCGTA 53.66%
Apta_32 DNA CGGTAAACTGCGTCCGAAGGGGCTGCAGTGACCCGAATGGGTCCG 53.33%
Apta_76 DNA CAGCGCTAGGGCTTTTAGCGTAATGGGTAGGGTGGTGCGGTGCAGATATCGGAATTGGTG 53.33%
Apta_255 DNA TAGCGATACTGCGTGGGTTGGGGCGGGTAGGGCCAGCAGTCTCGT 53.33%
Apta_487 DNA CGGGGAGTTGGGAGGGGGGGCAAAGCCTGTGTATTTATCTTCTGT 53.33%
Apta_1082 DNA GGCTGGTCCGCTGGGAACAAGGGCGGGAGGGAGGGTGTGGGTGCGACAAGCGGACCAGCC 53.33%

ABOUT

AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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