| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_667 | NaA43 | Molecule | Sodium | 39.1 mM | 12.5 mM Hepes (pH 7.4), 140 mM NaCl, 10 mM glucose, 1.2 mM MgCl2, and 1 mM CaCl2 | 25918425 |
| Aptamer Sequence: | GCGGCGGTACCAGGTCAAAGGTGGGTGAGGGGACGCCAAGAGTCCCCGCGGTTACATAGAG |
| The optimal secondary structure in dot-bracket notation: | ..(((........)))....((((.((.((((((.......)))))).)).))))...... |
| The centroid secondary structure in dot-bracket notation: | ..(((........)))....((((.((.((((((.......)))))).)).))))...... |
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_667 | Description | NaA43 |
| Aptamer chemistry | DNA | Length | 61 nt |
| GC content | 63.9% | Molecular weight | 19,035.17 Da |
| Molarity of 1 μg/μl solution | 52.53 μM | Number of G-quadruplexes | 2 |
| G-Score | 19 | Function | Aptasensor |
| Sequence | GCGGCGGTACCAGGTCAAAGGTGGGTGAGGGGACGCCAAGAGTCCCCGCGGTTACATAGAG | ||
| Applications | Detection and quantification of Na+ in living cells | ||
| Type | Detail | Type | Detail |
|---|---|---|---|
| PubChem ID | 5360545 | Molecular name | Sodium |
| Molecular formula | Na | Molecular weight | 22.99 |
| IUPAC name | sodium | InChIKey | KEAYESYHFKHZAL-UHFFFAOYSA-N |
| LogP | -0.381 | Topological polar surface area | 0 |
| Hydrogen bond acceptor | 0 | Hydrogen bond donor | 0 |
Synonym(s): 7440-23-5; Na; Sodium; Natrium; UNII-23J3BHR95O; 116001-96-8; MFCD00085307; Sodio; monosodium; mono sodium; mono-sodium; sodium atom; Sodium ingot; Sodium, CP; Sodium hydride, CP; Sodium hydride, 60%; 11Na; Sodium, ACS reagent, dry; Sodium hydride, dry, 95%; HSDB 745; NAH 80; DTXSID1049774; CHEBI:26708; EINECS 231-587-3; MFCD00003471; UN1427; AKOS015833457; Sodium Phyllo-pentaoxodimanganate(III); Sodium, SAJ first grade, >=99.5%; Sodium, 99%, lumps, contains kerosene; Sodium, 40 wt % dispersion in paraffin; Sodium metal, ingot in a sealed foil pack; Sodium, 99.95% trace metals basis, ingot; FT-0689077; Sodium, 25-35 wt % dispersion in paraffin; EC 231-587-3; AB01566864_01; Sodium hydride [UN1427] [Dangerous when wet]; Sodium hydride, 60 % dispersion in mineral oil; A838715; Sodium, solid, 99.95% trace metals basis, ampoule; Sodium standard for AAS, ready-to-use, in nitric acid; Sodium, Oil based standard solution, Specpure, Na 5000g/g; Sodium, cubes, contains mineral oil, 99.9% trace metals basis; Sodium, in kerosene, pieces (large), >=99.8% (sodium basis); Sodium hydride (in oil dispersion) 60% dispersion in mineral oil; Sodium standard for ICP, for ICP, ready-to-use, in nitric acid; Sodium standard for AAS, analytical standard, 10.00 g/L Na in nitric acid; Sodium, Ion chromatography standard solution, Specpure, Na+ 1000g/ml; Sodium hydride, powder (moistened with oil), in soluble SecuBags(R), 55-65% (gas-volumetric)
|
Interaction ID | 720 |
| Target type | Molecule | |
| Target unique ID | 5360545 | |
| Activity | 39.1 mM | |
| Binding Conditions/Buffer | 12.5 mM Hepes (pH 7.4), 140 mM NaCl, 10 mM glucose, 1.2 mM MgCl2, and 1 mM CaCl2 |
|
| Assay | Rate of the initial fluorescence enhancement was calculated for different Na+ concentration up to 400 mM |
|
| PubMed ID | 25918425 |
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_33 | DNA | GCGGTAAACTGCGTCCGAAGGGGCTGCAGTGACCCGAATGGGTCCGCCGCGAAGCG | |
| Apta_488 | DNA | CGACCAGGGTGGGAGGGGGACGGGCTGGCGGCGCGCGGTAATG | |
| Apta_408 | DNA | GCAATGGTACGGTACTTCCGTCATCAGCTTGTGATGTGGATGCGAACTGCAAAAGTGCACGCTACTTTGCTAA | |
| Apta_942 | DNA | AGTGGGTAAGGTCTGGTGGATTGTGGACGGGGGGCGGGGCAGTGGCTTGA | |
| Apta_865 | DNA | CTCCTCTGACTGTAACCACGTGTGCCAAAGAGAGTGGTGGGGGGGTGGGCGGAACTCGCGGCATAGGTAGTCCAGAAGCC | |
| Apta_100 | DNA | AGCAGCACAGAGGTCAGATGATTCAAGGGTAACACATCCAGGGGAACGGAATTGCAGCCCCCTATGCGTGCTACCGTGAA | |
| Apta_110 | DNA | AGCAGCACAGAGGTCAGATGGTTAGGAAGGTGAATAGGTACGACTGCAGGTCTATCGCAGCCTATGCGTGCTACCGTGAA | |
| Apta_100 | DNA | AGCAGCACAGAGGTCAGATGATTCAAGGGTAACACATCCAGGGGAACGGAATTGCAGCCCCCTATGCGTGCTACCGTGAA | |
| Apta_110 | DNA | AGCAGCACAGAGGTCAGATGGTTAGGAAGGTGAATAGGTACGACTGCAGGTCTATCGCAGCCTATGCGTGCTACCGTGAA | |
| Apta_278 | DNA | AGCAGCACAGAGGTCAGATGAGGCCTGGTGATCGTGCCCAGGCCATATGAGCAAGGAACCCCTATGCGTGCTACCGTGAA | |
| Apta_255 | DNA | TAGCGATACTGCGTGGGTTGGGGCGGGTAGGGCCAGCAGTCTCGT | |
| Apta_750 | DNA | ATGCGAACAGGTGGGTGGGTTGGGTGGATTGTTCGGCTTCTTGAT | |
| Apta_941 | DNA | CGGGTGCCTTAAAGTGTAGGTGGGAGGGGGATGATTATGTACGATCAAGT | |
| Apta_1041 | DNA | TTGGCCCCGCGTGATCATTGAGGGGAGGAGCCGAGGCGGGTCCAAGATTG | |
| Apta_1044 | DNA | TTTAACGTAACCTGCAAGGCGGGGAGGTGCGAGCCCCGTGTGTGGCTTGC | |
| Apta_1047 | DNA | TAGTCCCAAGGCACATAAGGGCCGGAGGTCTAGCGTCAGGGATACAGAGA | |
| Apta_409 | DNA | GCAATGGTACGGTACTTCCGGATGCGGAAACTGGCTAATTGGTGAGGCTGGGGCGGTCGTGCAGCAAAAGTGCACGCTACTTTGCTAA | |
| Apta_994 | DNA | GCAATGGTACGGTACTTCCGGACAGTGCTGAAAACTGTGACCCCCCAAAAGTGCACGCTACTTTGCTAA | |
| Apta_790 | DNA | GGGAGACAAGAATAAACGCTCAAGAAGTGAAAATGACAGAACACAACATTCGACAGGAGGCTCACAACAGGC | |
| Apta_1101 | DNA | CCGTAATACGACTCACTATAGGTATGTGACGCGCGTCAATCGCTGTCCTACCAAGCTTTGCAGAGAGGATCCTT |