| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_918 | Sgc-3b | Protein | LYAM1_HUMAN | N/A | PBS with 5 mm MgCl2, 1 mm CaCl2, and 0.1 mg/ml herring sperm DNA | 26199357 |
| Aptamer Sequence: | TTTACTTATTCAATTCCCGTGGGAAGGCTATAGAGGGGCCAGTCTATGAATAAGTTT |
| The optimal secondary structure in dot-bracket notation: | ...(((((((((.((((....))))((((.......))))......))))))))).. |
| The centroid secondary structure in dot-bracket notation: | ...(((((((((..(((....))).((((.......))))......))))))))).. |
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_918 | Description | Sgc-3b |
| Aptamer chemistry | DNA | Length | 57 nt |
| GC content | 40.4% | Molecular weight | 17,627.33 Da |
| Molarity of 1 μg/μl solution | 56.73 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Targeted binding |
| Sequence | TTTACTTATTCAATTCCCGTGGGAAGGCTATAGAGGGGCCAGTCTATGAATAAGTTT | ||
| Applications | Targeted binding to selectin L protein | ||
| Type | Detail | Type | Detail |
|---|---|---|---|
| Uniprot ID | P14151 | Protein name | L-selectin (CD62 antigen-like family member L) (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte surface antigen Leu-8) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (Lymph node homing receptor) (TQ1) (gp90-MEL) (CD antigen CD62L) |
| Gene name(s) | SELL LNHR LYAM1 | Organism | L-selectin (CD62 antigen-like family member L) (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte surface antigen Leu-8) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (Lymph node homing receptor) (TQ1) (gp90-MEL) (CD antigen CD62L) |
| Status | reviewed in uniprot database | Length | 372 |
| Mass | 42,187 | Activity regulation | N/A |
| Involvement in disease | N/A | Catalytic activity | N/A |
| PDB ID(s) | 2LGF;3CFW;5VC1; |
![]() |
Function | Calcium-dependent lectin that mediates cell adhesion by binding to glycoproteins on neighboring cells. |
|
Interaction ID | 143 |
| Target type | Protein | |
| Target unique ID | P14151 | |
| Activity | N/A | |
| Binding Conditions/Buffer | PBS with 5 mm MgCl2, 1 mm CaCl2, and 0.1 mg/ml herring sperm DNA |
|
| Assay | Flow cytometry for validating CD62L as a target for aptamer Sgc-3b. (A) Flow cytometry assay of Jurkat E6-1 cells stained with Sgc-3b-FAM and anti-CD62L-PE FAM-labeled random DNA (L45-FAM) and IgG-PE, which do not bind to cells, were used as the negative controls. (B) Flow cytometry results to show the competition of different concentrations of Sgc-3b-FAM with 0.62 g/ml anti-CD62L-PE in binding toward Jurkat E6-1 cells. (C) Flow cytometry results to show the competition of 5 g/ml anti-CD62L-PE with 100 nM Sgc-3b-FAM in binding toward Jurkat E6-1 cells. (D) Flow cytometry assay results showed that the siRNA-mediated depletion of CD62L in Jurkat E6-1 cells led to a reduced binding of aptamer Sgc-3b, but not aptamer Sgc-4e. Binding toward anti-CD62L, Sgc-3b and Sgc-4e were assessed at 72 h after siRNA treatment, where reduced binding toward anti-CD62L indicated the successful, albeit modest, knock-down of CD62L after siRNA treatment |
|
| PubMed ID | 26199357 |
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_450 | DNA | ATACCAGCTTATTCAATTACATGTCCTGAAGGGGAATAATATACAGCTTTGGGTGGGTAGATAGTAAGTGCAATCT | |
| Apta_31 | DNA | ATACCAGTCTATTCAATTGGGCCCGTCCGTATGGTGGGTGTGCTGGCCAGATAGTATGTGCAATCA | |
| Apta_1016 | DNA | ATACCAGCTTATTCAATTTCTTCGCCAGTGCCAGGATCTCAGTTGGCGGTTCATTAGCTGGGTTGGTCGAAGATAGTAAGTGCAATCT | |
| Apta_1187 | DNA | TGTACCGTCTGAGCGATTCGTACTTTATTCGGGAAGGGTATCAGCGGGGTTCAACAAGCCAGTCAGTGTTAAGGAGTGC | |
| Apta_1081 | DNA | CTTACGACTGTGGTCGGGTGGTGGGCCTCTAGAGGGGTGTCGTAAG | |
| Apta_451 | DNA | ATACCAGCTTATTCAATTGAGTAAGAGTGCACTATGTTTTACGAGCCGTTTCCTCGGCAGATAGTAAGTGCAATCT | |
| Apta_813 | DNA | TAGAGATATGACAGCGGGGAAGGTTAAGAGGCGCTAGGAG | |
| Apta_987 | DNA | GTACTGTCAATTGGAAGTGGTGTTACGTTGTGTAGTCAAATCAGTGC | |
| Apta_1045 | DNA | GGTGCTCAGGGAACTGTCTGAGGGATCAGGCTTAAGCCTGTCGAGCAGTT | |
| Apta_1235 | DNA | TGTACCGTCTGAGCGATTCGTACGATCGGGTCGGGGTCTATTTTAGGGCCATTTGGCAGCCAGTCAGTGTTAAGGAGTGC | |
| Apta_1015 | DNA | ATACCAGCTTATTCAATTGACCCGTTTCGTTCCCTCTGGGAAGTTTAGCCCAGTTGCCTGGGCGATACCAAGATAGTAAGTGCAATCT | |
| Apta_1104 | DNA | TACGACTCACTATAGGGATCCCCCCGAGTGAAGAGCAGGACAGCGGGACAGCGTCGAATTCCCTTTAGTGAGGGTT | |
| Apta_1110 | DNA | GTTGACGGATCCCTATTGCAGTGCTTGAGAGAGACCTCGCGTATATTTCGGAAGACCACGTGTAATGCCCCTAACT | |
| Apta_495 | DNA | GGGAATGGATCCACATCTACGTATTACTGCTGGTGACGAGGGCTAGACGACGTACCTTCACTGCAGACTTGACGAAGCTT | |
| Apta_1011 | DNA | GCTGTGTGACTCCTGCAATGGTAGCGGGTAGGGGAGGGAGGGTGAATGGAGGATGTTCATGGCAGCTGTATCTTGTCTCC | |
| Apta_792 | DNA | ATACCAGCTTATTCAATTCCCAAATTGCCACCACTTACAGCATGATAACATACTACATCTTTTCATCAAGATAGTAAGTGCAATCT | |
| Apta_805 | DNA | ATACCAGCTTATTCAATTAGGCGGTGCATTGTGGTTGGTAGTATACATGAGGTTTGGTTGAGACTAGTCGCAAGATATAGATAGTAAGTGCAATCT | |
| Apta_625 | DNA | ATACCAGCTTATTCAATTCAGGGCGGTATGAGGCTCGATCAAGGTCGGAGCGAGAATTTTTTCGCGGAGTCGGCTGGATCAGATAGTAAGTGCAATCT | |
| Apta_625 | DNA | ATACCAGCTTATTCAATTCAGGGCGGTATGAGGCTCGATCAAGGTCGGAGCGAGAATTTTTTCGCGGAGTCGGCTGGATCAGATAGTAAGTGCAATCT | |
| Apta_238 | DNA | CACACATTCCCGTCCTCGATACGTCTAGGCTTAGTGCCACTTGCTTAATC |