| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_563 | AR1 | Molecule | Manganese (II) ion | 100 μM | 50 mM Tris-HCl, pH 7.5, 20 mM MgCl2 | 11283591 |
| Aptamer Sequence: | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGAAAGCCAAAGCCGUAGCGCAGAUGAUCUCGCCAUCAGUACCGAAACGGUAGCGAGAGCUC |
| The optimal secondary structure in dot-bracket notation: | ........(((((.((((((....))))))((((((.....((....))....(((.(((...)))))))))))).......)))))(((....))). |
| The centroid secondary structure in dot-bracket notation: | ..............((((((....))))))((((((.....((....))....(((.((.....))))))))))).(((.....))).((....)).. |
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_563 | Description | AR1 |
| Aptamer chemistry | RNA | Length | 98 nt |
| GC content | 54.1% | Molecular weight | 31,742.02 Da |
| Molarity of 1 μg/μl solution | 31.50 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Aptasensor |
| Sequence | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGAAAGCCAAAGCCGUAGCGCAGAUGAUCUCGCCAUCAGUACCGAAACGGUAGCGAGAGCUC | ||
| Applications | Recognition of cAMP | ||
| Type | Detail | Type | Detail |
|---|---|---|---|
| PubChem ID | 23930 | Molecular name | Manganese (II) ion |
| Molecular formula | Mn | Molecular weight | 54.94 |
| IUPAC name | manganese | InChIKey | PWHULOQIROXLJO-UHFFFAOYSA-N |
| LogP | -0.003 | Topological polar surface area | 0 |
| Hydrogen bond acceptor | 0 | Hydrogen bond donor | 0 |
Synonym(s): 7439-96-5; Manganese; Mn; Colloidal manganese; Mangan; Manganese, elemental; manganide; Manganese metal alloy; Manganese fume; manganese(4+); Manganese metal; UNII-42Z2K6ZL8P; Manganese(1-); Manganese, ion (Mn1-); MANGANESE (II) ION; 42Z2K6ZL8P; Manganese powder; MFCD00011111; Cutaval; Magnacat; Tronamang; Mangan [Polish]; MANGANESE COMPOUNDS; Manganese powder, -325 mesh; manganeso; Teprosyn M; Manganese element; Mangan nitridovany; Mangan nitridovany [Czech]; Manganese-55; Manganese(4 ); Manganese(7+); CCRIS 1579; HSDB 550; Manganese ion(4 ); EINECS 231-105-1; Manganese, ion (Mn4 ); MNE 06PB; manganum; manganese atom; Manganese, ion (Mn(7+)); Manganese chips; manganese(0); manganese (IV); manganide(-I); manganese (0); manganide(1-); MN3; manganese(4+) ion; Manganese, 99%; manganese(IV) cation; Manganese fume, as Mn; Manganese fume (as Mn); Mn(IV); Manganese, -200 mesh; 25Mn; EC 231-105-1; Manganese pieces, irregular; Manganese compounds, n.o.s.; Mn(-); Mn(0); Manganese, metal, electrolytic; DTXSID2024169; CHEBI:18291; CHEBI:25158; CHEBI:33011; CHEBI:35154; HSDB 6945; Mn(4+); Manganese powder, APS <10 micron; Manganese nanopowder, APS 30-50nm; Manganese powder, -140+325 mesh; AKOS015833390; Manganese powder, 99.9% (metal basis); Mn4; S618; Manganese pieces, 10mm & down, ultrapure; FT-0689227; Manganese, chips, thickness <2.0 mm, 99%; C00034; Manganese granules, 0.8-3mm (0.03-0.12in); Manganese, powder, >=99.9% trace metals basis; Q27109868; Q27115185; M008000000; Manganese powder , -325 mesh, =99% trace metals basis; Manganese, rod, 10mm, diameter 4.0mm, cast, 99.5%; Manganese, rod, 35mm, diameter 2.0mm, cast, 99.5%; Manganese, rod, 47mm, diameter 2.0mm, cast, 99.5%; Manganese, rod, 50mm, diameter 4.0mm, cast, 99.5%; Manganese, rod, 50mm, diameter 6.35mm, cast, 99.5%; Manganese, flake, 25 mm, weight 100 g, purity 99.95%; Manganese, flake, 25 mm, weight 50 g, purity 99.95%; Manganese, flake, weight 200 g, 25 mm, purity 99.95%; Manganese, plasma standard solution, Specpure, Mn 10g/ml; Manganese, powder, -325 mesh, >=99% trace metals basis; Manganese, AAS standard solution, Specpure?, Mn 1000?g/ml; Manganese, Oil based standard solution, Specpure, Mn 5000g/g; Manganese, plasma standard solution, Specpure?, Mn 1000?g/ml; Manganese, foil, 25x25mm, thickness 2mm, hot-pressed, 99.95%; Manganese, foil, 50x50mm, thickness 2mm, hot-pressed, 99.95%; Manganese, Oil based standard solution, Specpure?, Mn 1000?g/g; Manganese, plasma standard solution, Specpure?, Mn 10,000?g/ml; Manganese, rod, 2.0 mm diameter, length 52 mm, purity 99.5%; Manganese, rod, length 25 mm, 2.0 mm diameter, purity 99.5%; Manganese standard for AAS, ready-to-use, traceable to BAM, in nitric acid; Manganese, foil, thickness 0.016 mm, size 25 x 25 mm, purity 98.7%; Manganese, foil, thickness 0.016 mm, size 50 x 50 mm, purity 98.7%; Manganese sputtering target, 50.8mm (2.0in) dia x 3.18mm (0.125in) thick; Manganese sputtering target, 50.8mm (2.0in) dia x 6.35mm (0.250in) thick; Manganese sputtering target, 76.2mm (3.0in) dia x 3.18mm (0.125in) thick; Manganese sputtering target, 76.2mm (3.0in) dia x 6.35mm (0.250in) thick; Manganese standard for IC, certified reference material, ready-to-use, traceable to BAM; Manganese standard for ICP, for ICP, ready-to-use, traceable to BAM, in nitric acid; Manganese, powder, 300 max. part. size (micron), weight 1000 g, purity 99.5%; Manganese, powder, 300 max. part. size (micron), weight 2000 g, purity 99.5%; Manganese, powder, 45 max. part. size (micron), weight 2000 g, purity 99.5%; Manganese, powder, max. particle size 300 micron, weight 100 g, purity 99.5%; Manganese, powder, max. particle size 300 micron, weight 200 g, purity 99.5%; Manganese, powder, max. particle size 300 micron, weight 500 g, purity 99.5%; Manganese, powder, max. particle size 45 micron, weight 100 g, purity 99.5%; Manganese, powder, max. particle size 45 micron, weight 1000 g, purity 99.5%; Manganese, powder, max. particle size 45 micron, weight 200 g, purity 99.5%; Manganese, powder, max. particle size 45 micron, weight 500 g, purity 99.5%; Manganese, foil, not light tested, 100x100mm, thickness 0.0125mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 100x100mm, thickness 0.015mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 100x100mm, thickness 0.01mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 100x100mm, thickness 0.025mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 100x100mm, thickness 0.02mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.001mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.0025mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.002mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.003mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.004mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.005mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.006mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.007mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.008mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.009mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.0125mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.015mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.01mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.025mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.02mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 25x25mm, thickness 0.05mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.001mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.0025mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.002mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.003mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.004mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.005mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.006mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.007mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.008mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.009mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.0125mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.015mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.01mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.025mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.02mm, permanent polyester support, 98.7%; Manganese, foil, not light tested, 50x50mm, thickness 0.05mm, permanent polyester support, 98.7%
|
No relevant experimental diagram |
Interaction ID | 596 |
| Target type | Molecule | |
| Target unique ID | 23973 | |
| Activity | 100 μM | |
| Binding Conditions/Buffer | 50 mM Tris-HCl, pH 7.5, 20 mM MgCl2 |
|
| Assay | N/A |
|
| PubMed ID | 11283591 | |
|
No relevant experimental diagram |
Interaction ID | 619 |
| Target type | Molecule | |
| Target unique ID | 104730 | |
| Activity | 100 μM | |
| Binding Conditions/Buffer | 50 mM Tris-HCl, pH 7.5, 20 mM MgCl2 |
|
| Assay | N/A |
|
| PubMed ID | 11283591 | |
|
No relevant experimental diagram |
Interaction ID | 718 |
| Target type | Molecule | |
| Target unique ID | 23930 | |
| Activity | 100 μM | |
| Binding Conditions/Buffer | 50 mM Tris-HCl, pH 7.5, 20 mM MgCl2 |
|
| Assay | N/A |
|
| PubMed ID | 11283591 | |
|
No relevant experimental diagram |
Interaction ID | 726 |
| Target type | Molecule | |
| Target unique ID | 935 | |
| Activity | 100 μM | |
| Binding Conditions/Buffer | 50 mM Tris-HCl, pH 7.5, 20 mM MgCl2 |
|
| Assay | N/A |
|
| PubMed ID | 11283591 | |
|
No relevant experimental diagram |
Interaction ID | 805 |
| Target type | Molecule | |
| Target unique ID | 23994 | |
| Activity | 100 μM | |
| Binding Conditions/Buffer | 50 mM Tris-HCl, pH 7.5, 20 mM MgCl2 |
|
| Assay | N/A |
|
| PubMed ID | 11283591 |
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_710 | RNA | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGUCUGGAUACCAUGCAUGAUGCACCUUGGCAGUCUUACGAAACGGUAGCGAGAGCUC | |
| Apta_561 | RNA | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGCCUGUGGAAACAGACGUGGCACAUGACUACGUCGAAACGGUAGCGAGAGCUC | |
| Apta_566 | RNA | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGCCCUGCGAUGCAGAAAGGUGCUGACGACACAUCGAAACGGUAGCGAGAGCUC | |
| Apta_613 | RNA | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGCCUUAGGAUAUGCAUGAUGCAGAAGGACGUCGAAACGGUAGCGAGAGCUC | |
| Apta_562 | RNA | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGCCUUUAGGGCCAAGUGUGGUGAAAGACACACUCGAAACGGUAGCGAGAGCUC | |
| Apta_874 | RNA | GGAUAAUAGCCGUAGGUUGCGAAAGCGACCCUGAUGAGCCUUAGGAUAUGUCUGGAUACCAUGCAUGAUGCACCUUGGCAGUCUUACAGAAGGACGUCGAAACGGUAGCGAGAGCUC | |
| Apta_295 | RNA | AUACCAGCUUAUUCAAUUGCCUGAAAAGCUAUCGCCCAAUUCGCAGUGAUAUCCUUUAAGAUAGUAAGUGCAAUCU | |
| Apta_416 | RNA | GGACCUCGGCGAAAGCCGGUAACGCCACAAGUCGGAGGGUAAGAUCUGACAGGAACUGGGUGACGGAGGUUAGGUGC | |
| Apta_429 | RNA | GCAUGCAGUGUCUAUUCUCGAGUAGCGAUCGUUGAAGGGGUAUAAGGUUGGCAGAUCGCUAGCAUGCAACUGACUCGGAUAAGCA | |
| Apta_766 | RNA | GGUUACCAGCCUUCACUGCGGACGGACAGAGAGUGCAACCUGCCGUGCCGCACCACGGUCGGUCACAC | |
| Apta_301 | RNA | AUACCAGCUUAUUCAAUUGCCUGAAAAGUUGAACUCCAAAUACGCGCUGAGAUAGUAAGUGCAAUCU | |
| Apta_551 | RNA | GGAUGUCCAGUCGCUUGCAAUGCCCUUUUAGACCCUGAUGAGCGGUGCUAGUUAGUUGCAGUUUCGGUUGUUACGCGAAACGGUGAAAGCCGUAGGUCU | |
| Apta_157 | RNA | GGGUUCACUGCAGACUUGACGAAGCUUACAAACAAGAGCAAAAAGGGAGUUGACGUAGACUGUGCGGAAUGGAUCCACAUCUACGAAUUC | |
| Apta_294 | RNA | AUACCAGCUUAUUCAAUUGCCUGAUUAGCGGUAUCACGAUUACUUACCUUCGUUGCUGAGAUAGUAAGUGCAAUCU | |
| Apta_297 | RNA | AUACCAGCUUAUUCAAUUGCCUGAGUAGCUGGGUCCGUCCCCACACAUUACCAUUUGUAGAUAGUAAGUGCAAUCU | |
| Apta_353 | RNA | GAAUUCCGCGUGUGCCAGCGAAAGUUGCGUAUGGGUCACAUCGCAGGCACAUGUCAUCUGGGCGGUCCGUUCGGGAUCC | |
| Apta_499 | RNA | GGACGCGUGGUACCAGGCCGAUCUAUGGACGCUAUAGGCACACCGGAUACUUUAACGAUUGGCUAAGCUUCCGCGGGGAUC | |
| Apta_690 | RNA | GGGCGAAUUCCCGAGGACCAAAUAGUACCACCCGGGAAAACAGCUAAUGCCGAAACGGAGAUUUUUUCUGCAGAAGCU | |
| Apta_280 | RNA | GAUAAUACGACUCACUAUAGGGUUCACUGCAGACUUGACGAAGCUUGCAGAAAAGGGGGAAGAAGAGGGUGAUUCAGGCGAGAGAAUGGAUCCACAUCUACGAAUUC | |
| Apta_123 | RNA | GGGAGAAAGGGAAGCUUGAGCAGCAGGAGGGCCGGCGUUAGGGUUAGCGAGCCGAUUGAAAGAAGAAGGAACGAGCGUACGGAUCCGAUC |