Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 627
Aptamer sequence: CTCTCGGGACGACAGCCGAGTTGATTCAACAGCCGAGTCGTCCC
Target unique ID: 5793
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_593 Glucose-bisboronic acid aptamer-sensor Molecule D-Glucose 5 nM Shinkai's receptor 50 uM with 2% methanol 25343606
Structure information of aptamer
Aptamer Sequence: CTCTCGGGACGACAGCCGAGTTGATTCAACAGCCGAGTCGTCCC
The optimal secondary structure in dot-bracket notation: .....((((((((...((.((((......)))))).))))))))
The centroid secondary structure in dot-bracket notation: .....((((((((...((.((((......)))))).))))))))
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_593 Description Glucose-bisboronic acid aptamer-sensor
Aptamer chemistry DNA Length 44 nt
GC content 61.4% Molecular weight 13,478.64 Da
Molarity of 1 μg/μl solution 74.19 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Aptasensor
Sequence CTCTCGGGACGACAGCCGAGTTGATTCAACAGCCGAGTCGTCCC
Applications Recognition of D-Glucose
Target information
Type Detail Type Detail
PubChem ID 5793 Molecular name D-Glucose
Molecular formula C6H12O6 Molecular weight 180.16
IUPAC name (3R,4S,5S,6R)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol InChIKey WQZGKKKJIJFFOK-GASJEMHNSA-N
LogP -3.221 Topological polar surface area 110.38
Hydrogen bond acceptor 6 Hydrogen bond donor 5

Synonym(s):
D-Glc; D-Glucopyranose; D-Glucopyranoside; D-Glucose; Glc; Glucopyranose; Glucopyranoside; Glucose; 2280-44-6; Grape sugar; D-Glcp; Traubenzucker; Glucose solution; (3R,4S,5S,6R)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol; CHEBI:4167; Corn sugar; a-D-Glucose; Glucopyranose, D-; DSSTox_CID_2910; Glucodin; Goldsugar; Meritose; Vadex; Clintose L; CPC hydrate; Roferose ST; D-glucose (closed ring structure, complete stereochemistry); Clearsweet 95; Staleydex 95M; Staleydex 111; (+)-Glucose; (3R,4S,5S,6R)-6-(Hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetraol; Cerelose 2001; rel-(3R,4S,5S,6R)-6-(Hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetraol; Tabfine 097(HS); 54-17-1; 2h-pyran-2,3,4,5-tetraol; D-Glucopyranose, anhydrous; glc-ring; Cartose Cerelose; D-aGlucopyranose; D-glucose-ring; Glucose injection; Glucose 40; Staleydex 130; EINECS 218-914-5; Glc-OH; Meritose 200; nchembio867-comp4; Glucose (JP17); 6-(hydroxymethyl)tetrahydropyran-2,3,4,5-tetraol; Anhydrous Glucose ,(S); Purified glucose (JP17); Epitope ID:142342; D-(+)-DEXTROSE; DSSTox_RID_76784; DSSTox_RID_82925; DSSTox_GSID_22910; DSSTox_GSID_48729; GTPL4536; CHEMBL1222250; BDBM34103; DTXSID501015215; DTXSID901015217; Tox21_113165; Tox21_200145; AKOS025147374; NSC 287045; CAS-50-99-7; NCGC00166293-01; NCGC00257699-01; BS-48662; CAS-58367-01-4; G0048; (3R,4S,5S,6R)-6-(hydroxymethyl)tetrahydro-; 2045-EP2270006A1; 2045-EP2270008A1; 2045-EP2270011A1; 2045-EP2270014A1; 2045-EP2272822A1; 2045-EP2272826A1; 2045-EP2275102A1; 2045-EP2275412A1; 2045-EP2277565A2; 2045-EP2277566A2; 2045-EP2277567A1; 2045-EP2277568A2; 2045-EP2277569A2; 2045-EP2277570A2; 2045-EP2277848A1; 2045-EP2277867A2; 2045-EP2280003A2; 2045-EP2284149A1; 2045-EP2284160A1; 2045-EP2287147A2; 2045-EP2287165A2; 2045-EP2287166A2; 2045-EP2289892A1; 2045-EP2292233A2; 2045-EP2292280A1; 2045-EP2292617A1; 2045-EP2292620A2; 2045-EP2292624A1; 2045-EP2295055A2; 2045-EP2295411A1; 2045-EP2295415A1; 2045-EP2295416A2; 2045-EP2295424A1; 2045-EP2295426A1; 2045-EP2295427A1; 2045-EP2295430A2; 2045-EP2295431A2; 2045-EP2295439A1; 2045-EP2298735A1; 2045-EP2298744A2; 2045-EP2298748A2; 2045-EP2298762A2; 2045-EP2298770A1; 2045-EP2298779A1; 2045-EP2301533A1; 2045-EP2301919A1; 2045-EP2301923A1; 2045-EP2301931A1; 2045-EP2301937A1; 2045-EP2305248A1; 2045-EP2305257A1; 2045-EP2305636A1; 2045-EP2305657A2; 2045-EP2305663A1; 2045-EP2305684A1; 2045-EP2305695A2; 2045-EP2305696A2; 2045-EP2305697A2; 2045-EP2305698A2; 2045-EP2308812A2; 2045-EP2308852A1; 2045-EP2311453A1; 2045-EP2311806A2; 2045-EP2311821A1; 2045-EP2311823A1; 2045-EP2311824A1; 2045-EP2311829A1; 2045-EP2311836A1; 2045-EP2311842A2; 2045-EP2314295A1; 2045-EP2314571A2; 2045-EP2314584A1; 2045-EP2377849A2; C00031; D00009; Q37525; 114935-EP2270010A1; 114935-EP2292593A2; 114935-EP2298728A1; Q23905964; N_FULL/O_FULL_10000000000000_GS_656; WURCS=2.0/1,1,0/[a2122h-1x_1-5]/1/

Activity data
Interaction ID 627
Target type Molecule
Target unique ID 5793
Activity 5 nM
Binding Conditions/Buffer

Shinkai's receptor 50 uM with 2% methanol

Assay

The response of sensors

PubMed ID 25343606
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_722 DNA CTCTCGGGACGACGGCCCGATCTCAGAGTAGTCGTCCC 72.73%
Apta_591 DNA CTCTCGGGACGACGGCTGGCACGTTTGGTTCAAGAATGTGGGTGTCGTCCC 72.55%
Apta_721 DNA CTCTCGGGACGACCGCGGTAGTCTTAACCTAAAGCGGTGTCAGGTCGTCCC 70.59%
Apta_592 DNA CTCTCGGGACGACCACTACGCATAGTTTCTATCGCCAGGAAGGGTCGTCCC 68.63%
Apta_556 DNA GGCTCTCGGGACGACATGGATTTTCCATCAACGAAGTGCGTCCGTCCC 66.67%
Apta_697 DNA CTCTCGGGACGACGGACGCTAATCTTACAAGGGCGTAGTGTATGTCGTCCC 64.71%
Apta_1022 DNA CTCCTTCAACGAAGTGGGTTCCTTCAACGAAGTGGGTCTC 59.09%
Apta_1126 DNA TCGGGCGAGTCGTCTGCGGGCGGATAGACTACGACACCGCATCGTCCTCCC 56.86%
Apta_164 DNA TATAGACCACAGCCTGAGATTAACCACCAACCCAGGACT 56.82%
Apta_1023 DNA CTCCTTCAACGAAGTGGGTCTCCTTCAACGAAGTGGGTCTC 56.82%
Apta_1125 DNA TCGGGCGAGTCGTCTGGGGAGGTCAGAACGAAAGGCCCGCATCGTCCTCCC 54.90%
Apta_290 DNA GAACTCACCGGGAAGAAGCCCGTTCCGTCACAGACATGTT 54.55%
Apta_604 DNA TCCTGACCTTAGCCTATGTTTTCTCTACCGGCTATGTTAC 54.55%
Apta_961 DNA CTAGTGGGGACCTTCCAGGGTAACTGCTCGCATTCTCCAT 54.55%
Apta_1203 DNA CCCTGCGGGGCTACCCGATATGTGTCCGAGTGGTG 54.55%
Apta_600 DNA GTCTCTGTGTGCGCCAGAGAACACTGGGGCAGATATGGGCCAGCACAGAATGAGGCCC 53.45%
Apta_600 DNA GTCTCTGTGTGCGCCAGAGAACACTGGGGCAGATATGGGCCAGCACAGAATGAGGCCC 53.45%
Apta_636 DNA TAGCCGGATCGCGCTGGCCAGATGATATAAAGGGTCAGCCCCCCA 53.33%
Apta_509 DNA TCGCGCGAGTCGTCTGGGGGACTAGAGGACTTGTGCGGCCCCGCATCGTCCTCCC 52.73%
Apta_1277 DNA TCCGTGGTACGGTTACTCGTTCCTTATGTATGTTGCTACAATGGATTGCGTCCCCAGGG 52.54%