Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1166
Aptamer sequence: GTTGACGGATCCCTATTGCAGTGCTTGAGAGAGACCTCGCGTATATTTCGGAAGACCACGTGTAATGCCCCTAACT
Target unique ID: 14990
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_1110 | Scrambled SE48 | Cell | Staphylococcus epidermidis (Winslow and Winslow) Evans | N/A | PBS containing 1% BSA and 0.05% Tween 20 | 30477331 |
Structure information of aptamer
| Aptamer Sequence: | GTTGACGGATCCCTATTGCAGTGCTTGAGAGAGACCTCGCGTATATTTCGGAAGACCACGTGTAATGCCCCTAACT |
| The optimal secondary structure in dot-bracket notation: | ((((..((.....(((((((((((((..((((.............))))..)))..))).)))))))))..)))). |
| The centroid secondary structure in dot-bracket notation: | ((((..((.....((((((((((.................................))).)))))))))..)))). |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_1110 | Description | Scrambled SE48 |
| Aptamer chemistry | DNA | Length | 76 nt |
| GC content | 50.0% | Molecular weight | 23,408.99 Da |
| Molarity of 1 μg/μl solution | 42.72 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Target detection |
| Sequence | GTTGACGGATCCCTATTGCAGTGCTTGAGAGAGACCTCGCGTATATTTCGGAAGACCACGTGTAATGCCCCTAACT | ||
| Applications | Capture, detect or remove S. epidermidis contaminant from platelet concentrates | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| ATCC ID | 14990 | Cell name | Staphylococcus epidermidis (Winslow and Winslow) Evans |
| Category | Bacteria | Organism | N/A |
| Product type | N/A | Cell type | N/A |
| Morphology | N/A | Tissue | N/A |
| Disease | N/A | Product format | Freeze-dried |
| Antigen expression | N/A | Genes expressed | N/A |
| Cell description | Staphylococcus epidermidis strain Fussel was isolated from a nose. It has applications in efficacy testing, inhibition testing, and quality control. |
|
|
| Application(s) | Media testing; Quality control | ||
Activity data
|
No relevant experimental diagram |
Interaction ID | 1166 |
| Target type | Cell | |
| Target unique ID | 14990 | |
| Activity | N/A | |
| Binding Conditions/Buffer | PBS containing 1% BSA and 0.05% Tween 20 |
|
| Assay | N/A |
|
| PubMed ID | 30477331 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_943 | DNA | GAAGGTGGAGCGGTTAGGATACTAGCGAATGAAGACACGTTAGCTGATCT | |
| Apta_139 | DNA | GATAAACGCCTTGATTAAAGGCCCAGTTCTTTAGGCCTACACGTGCTGCGACATTAATT | |
| Apta_1117 | DNA | CGTACGGAATTCGCTAGCGGACTGGAGTCTAGACCGGGTAGCTGTGGTGGATCCGAGCTCCACGTG | |
| Apta_607 | DNA | TGAGGCGGGTGGGTGGGTTGAATATGCTGATTACCCCATCGGAGAACGTTAAGGCGCTTC | |
| Apta_684 | DNA | GGCGGACCAAGGGGACACCACAGATGAATGTACAGTACCATGTTACTGCGCCCGTAGGTG | |
| Apta_918 | DNA | TTTACTTATTCAATTCCCGTGGGAAGGCTATAGAGGGGCCAGTCTATGAATAAGTTT | |
| Apta_981 | DNA | TATGGAGAGTCAATGAGTACAGTCTCGTCTCAATAACGGAGCCTCGTCCGTGCCCCCG | |
| Apta_1232 | DNA | GGCCACACAAACAACATGACAACACGTCTCACATAACGCCCACGTGCTGCCGCCTCATCG | |
| Apta_105 | DNA | AGCAGCACAGAGGTCAGATGATGCTCTAGGCGAAAGACTTGGCGTAGAACGACGGGAGGCCCTATGCGTGCTACCGTGAA | |
| Apta_105 | DNA | AGCAGCACAGAGGTCAGATGATGCTCTAGGCGAAAGACTTGGCGTAGAACGACGGGAGGCCCTATGCGTGCTACCGTGAA | |
| Apta_770 | DNA | GAATTCAGTCGGACAGCGGCATTTACATTCCATGGGAAATTTCTCAAGCGGTATTTCATTTCGATGGACGAATATCGTCTCCC | |
| Apta_128 | DNA | GGTATTGAGGGTCGCATCCCGTAGTGTGTTCTTATTCGTGTCTGTGTGTGTTCTGTCGGATGGCTCTAACTCTCCTCT | |
| Apta_277 | DNA | TTTTTTGGTCAGATGAGGCCTGGTGATCGTGCCCAGGCCATATGAGCAAGGAACCCCTATGCGTGCT | |
| Apta_336 | DNA | CATGCTTCCCCAGGGAGATGACCGGGGCGTACACCGTCGCGGCACATGTCTGAATGCGTTTAGTCTCTGTGG | |
| Apta_408 | DNA | GCAATGGTACGGTACTTCCGTCATCAGCTTGTGATGTGGATGCGAACTGCAAAAGTGCACGCTACTTTGCTAA | |
| Apta_421 | DNA | ATCTACGAATTCATCAGGGCTAAAGAGTGCAGAGTTACTTAGCCCGTGA | |
| Apta_457 | DNA | AGCTCCAGAAGATAAATTACAGGGGATCAGTAAGGTTGAGACGGCCTGAATCTATCGTGGAGACCACGCGACGCAACTAGGATACTATGACCCC | |
| Apta_531 | DNA | ATACGGGAGCCAACACCACATCGACTTACGAATCAACGCGTTTATTATTGGTTCAGAGCAGGTGTGACGGAT | |
| Apta_534 | DNA | ATCCGTCACACCTGCTCTTGTAGGGTTCCCACCCAATTCAGTTCCGTTAAACCATGGTGTTGGCTCCCGTAT | |
| Apta_600 | DNA | GTCTCTGTGTGCGCCAGAGAACACTGGGGCAGATATGGGCCAGCACAGAATGAGGCCC |
DEV TOOL
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