Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 979
Aptamer sequence: ACACTCTTTTGCTCGTGTTTTTGCCTGTTACATAAAATGAATCAGTGGATGTTTCCTTCT
Target unique ID: Other-25
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_889 | Aptamer clone31 | Other | Escherichia coli (ETEC) K88 | 36 nM | 20 mmol/L HEPES, 1 mmol/L MgCl2, 1 mmol/L CaCl2 and 120 mmol/L KCl | 21627466 |
Structure information of aptamer
| Aptamer Sequence: | ACACTCTTTTGCTCGTGTTTTTGCCTGTTACATAAAATGAATCAGTGGATGTTTCCTTCT |
| The optimal secondary structure in dot-bracket notation: | ((((..........))))......(((...(((...)))...))).(((....))).... |
| The centroid secondary structure in dot-bracket notation: | ..............................................(((....))).... |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_889 | Description | Aptamer clone31 |
| Aptamer chemistry | DNA | Length | 60 nt |
| GC content | 36.7% | Molecular weight | 18,367.78 Da |
| Molarity of 1 μg/μl solution | 54.44 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Target detection |
| Sequence | ACACTCTTTTGCTCGTGTTTTTGCCTGTTACATAAAATGAATCAGTGGATGTTTCCTTCT | ||
| Applications | Detection of Escherichia coli K88 | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-25 | Name | Escherichia coli (ETEC) K88 |
Activity data
|
No relevant experimental diagram |
Interaction ID | 979 |
| Target type | Other | |
| Target unique ID | Other-25 | |
| Activity | 36 nM | |
| Binding Conditions/Buffer | 20 mmol/L HEPES, 1 mmol/L MgCl2, 1 mmol/L CaCl2 and 120 mmol/L KCl |
|
| Assay | N/A |
|
| PubMed ID | 21627466 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_826 | DNA | ATCCGTCACACCTGCTCTGCACGGGCTCAGTTTGGCTTTGTATCCTAAGAGGGATGGTGTTGGCTCCCGTAT | |
| Apta_349 | DNA | ATACCAGCTTATTCAATTAGACGAGTTTTATTCATTTTCCATGTCGTAGCTTACCGTGAGATAGTAAGTGCAATCT | |
| Apta_530 | DNA | ATCCGTCACACCTGCTCTGTGTACGCCCGTATTTACGTTCCTAGCAATTGCTATGTGGTGTTGGCTCCCGTAT | |
| Apta_783 | DNA | AAGGGGTTGGGTGGGTTTATACAAATTAATTAATATTGTATGGTATATTT | |
| Apta_535 | DNA | ATCCGTCACACCTGCTCTTGGGGTTATTACTCGTGAGATTGGGAATAGGTTACATGGTGTTGGCTCCCGTAT | |
| Apta_1052 | DNA | ATCCGTCACACCTGCTCTATTCCTCTGTTGAAGAACCACTTCCGGAAATAAGAGTGGTGTTGGCTCCCGTAT | |
| Apta_1182 | DNA | GAATTCAGTCGGACAGCGTCAGTCGTCCCTTTATGCTTGGTGCTCACCGTCTGAATTTCTTCAGATGGACGAATATCGTCTCCC | |
| Apta_654 | DNA | GCACACCGATGGCGGTCCTGTTTTACGGTAGCTTATATGCAGGGGGTGTGCGTG | |
| Apta_977 | DNA | CAATCTGCTAAAACTTAAAGCCTATTAATGAAATTGTTAAGGTGGTATCC | |
| Apta_524 | DNA | ATCCGTCACACCTGCTCTGGCATTAGTATTCCATAGCCGGCCAAGTCTATGTAGTGGTGTTGGCTCCCGTAT | |
| Apta_107 | DNA | AGCAGCACAGAGGTCAGATGTTCATTTCAGTTGACCGATAGCATTGAGCAATGATCTATTCCTATGCGTGCTACCGTGAA | |
| Apta_107 | DNA | AGCAGCACAGAGGTCAGATGTTCATTTCAGTTGACCGATAGCATTGAGCAATGATCTATTCCTATGCGTGCTACCGTGAA | |
| Apta_127 | DNA | GGTATTGAGGGTCGCATCCACTGGTCGTTGTTGTCTGTTGTCTGTTATGTTGTTTCGTGATGGCTCTAACTCTCCTCT | |
| Apta_461 | DNA | CGCTCGGCTTCACGAGATTCGTGTCGTTGTGTCCTGTACCCGCCTTGACCAGTCACTCTAGAGCATCCGGACTG | |
| Apta_523 | DNA | ATCCGTCACACCTGCTCTGACGCTGGGGTCGACCCGGAGAAATGCATTCCCCTGTGGTGTTGGCTCCCGTAT | |
| Apta_591 | DNA | CTCTCGGGACGACGGCTGGCACGTTTGGTTCAAGAATGTGGGTGTCGTCCC | |
| Apta_815 | DNA | CATCCGTCACACCTGCTCTGGCCACTAACATGGGGACCAGGTGGTGTTGGCTCCCGTATC | |
| Apta_851 | DNA | CCATGTTTTGTAGGTGTAATAGGTCATGTTAGGGTTTCTG | |
| Apta_1051 | DNA | ATCCGTCACACCTGCTCTATACACATTGTGTTTACTCCCAGTTTTTTAGACTTATGGTGTTGGCTCCCGTAT | |
| Apta_1063 | DNA | AACTTATCGGAGCGTGATTTCCGTCTCGCCGCTTTCCTTT |
DEV TOOL
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