Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 966
Aptamer sequence: GCCGCACAATCGGGTTGGGCAGGGAGGGCACGTGTGGCGC
Target unique ID: Other-13
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_880 | aptamer A6 | Other | Ara h 1 | 1210 nM | 25 mM TRIS, 192 mM glycine, and 5 mM K2HPO4 (TGK pH 8.3) | 23318547 |
Structure information of aptamer
| Aptamer Sequence: | GCCGCACAATCGGGTTGGGCAGGGAGGGCACGTGTGGCGC |
| The optimal secondary structure in dot-bracket notation: | (((((((........................))))))).. |
| The centroid secondary structure in dot-bracket notation: | (((((((........................))))))).. |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_880 | Description | aptamer A6 |
| Aptamer chemistry | DNA | Length | 40 nt |
| GC content | 72.5% | Molecular weight | 12,484.97 Da |
| Molarity of 1 μg/μl solution | 80.10 μM | Number of G-quadruplexes | 3 |
| G-Score | 63 | Function | Aptasensor |
| Sequence | GCCGCACAATCGGGTTGGGCAGGGAGGGCACGTGTGGCGC | ||
| Applications | FO-SPR biosensing of peanut allergens in food matrices | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-13 | Name | Ara h 1 |
Activity data
|
No relevant experimental diagram |
Interaction ID | 966 |
| Target type | Other | |
| Target unique ID | Other-13 | |
| Activity | 1210 nM | |
| Binding Conditions/Buffer | 25 mM TRIS, 192 mM glycine, and 5 mM K2HPO4 (TGK pH 8.3) |
|
| Assay | N/A |
|
| PubMed ID | 23318547 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_706 | DNA | CCGGCCAAGGGTGGGAGGGAGGGGGCCGG | |
| Apta_683 | DNA | GCAGTACGATCGGGGGTGGGTGGATGTAGG | |
| Apta_870 | DNA | CCGGGGAATCTAGGGGAGGGCGGGTGGGTCAATTGAGCCG | |
| Apta_255 | DNA | TAGCGATACTGCGTGGGTTGGGGCGGGTAGGGCCAGCAGTCTCGT | |
| Apta_63 | DNA | GACCCGTGGTAGGGTAGGATGGGGTGGTC | |
| Apta_74 | DNA | GGACAGTAGGTTGGTGTGGTTGGGGCTGTCC | |
| Apta_650 | DNA | GCACACCGATGGCGGTCCTGTTTAGGGGGTGTGCGTGGGGAGGTGCGGTTGC | |
| Apta_15 | DNA | TGAGGGGGGGGGAGGGCGGGGCTGC | |
| Apta_42 | DNA | GCTGGTCTCTGCGGGTTGTTGCGCCGCGGCACCCTTGGCA | |
| Apta_142 | DNA | CGCACATCAGTTTAGCAGCGCCAAAGGCGGAAGCGCA | |
| Apta_148 | DNA | CCGTAGGTTCGGGGTCGGAGTGGTCCGGAAGGTGGCGTGG | |
| Apta_218 | RNA | AGCCGCGAGGGGAGGGAUAGGGUAGGGCGCGGCU | |
| Apta_245 | DNA | ACAGGGGTGTGGGGACAGGGGTGTGGGG | |
| Apta_675 | DNA | ACTGTCCGTCGGGTTTAGGGTGGCGTTCGG | |
| Apta_681 | DNA | CCTGACGATCGGGTGTGGGTTGGCTTGAGG | |
| Apta_831 | DNA | CCGCCCAGCGGGGGTAGGGCCGGACGTAGGAGGAGCTGCG | |
| Apta_1094 | DNA | GGAATCGTGGGTGGTAGGGTAGGGGATGCA | |
| Apta_1167 | RNA | GGCGCGAGGAAGGAGGUCUGAGGAGGUCACUGCGCC | |
| Apta_1188 | DNA | CGGGCGGGGCGTGGGGTGTTGGAGTGGAGGGCGGGGCGGC | |
| Apta_1200 | DNA | GGCACACAGGACTATACAGTGTTGCAGTGTTGCTG |
DEV TOOL
 |
 |
 |
 |