Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1167
Aptamer sequence: GTGCGTCGCATGATCGCGATTAGTGCGACCATGTACGATTCTCACGACAACGACACTGTACTTGAGGACTGTCTCC
Target unique ID: 14990
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_1111 Scrambled SE52 Cell Staphylococcus epidermidis (Winslow and Winslow) Evans N/A PBS containing 1% BSA and 0.05% Tween 20 30477331
Structure information of aptamer
Aptamer Sequence: GTGCGTCGCATGATCGCGATTAGTGCGACCATGTACGATTCTCACGACAACGACACTGTACTTGAGGACTGTCTCC
The optimal secondary structure in dot-bracket notation: ...(((.(((((.(((((.....))))).)))))))).((((((..(((.......)))...))))))........
The centroid secondary structure in dot-bracket notation: ....((.(((((.(((((.....))))).)))))))..((((((..(((.......)))...))))))........
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_1111 Description Scrambled SE52
Aptamer chemistry DNA Length 76 nt
GC content 52.6% Molecular weight 23,369.95 Da
Molarity of 1 μg/μl solution 42.79 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Target detection
Sequence GTGCGTCGCATGATCGCGATTAGTGCGACCATGTACGATTCTCACGACAACGACACTGTACTTGAGGACTGTCTCC
Applications Capture, detect or remove S. epidermidis contaminant from platelet concentrates
Target information
Type Detail Type Detail
ATCC ID 14990 Cell name Staphylococcus epidermidis (Winslow and Winslow) Evans
Category Bacteria Organism N/A
Product type N/A Cell type N/A
Morphology N/A Tissue N/A
Disease N/A Product format Freeze-dried
Antigen expression N/A Genes expressed N/A
Cell description Staphylococcus epidermidis strain Fussel was isolated from a nose. It has applications in efficacy testing, inhibition testing, and quality control.
Application(s) Media testing; Quality control
Activity data

No relevant experimental diagram

 Interaction ID 1167
Target type Cell
Target unique ID 14990
Activity N/A
Binding Conditions/Buffer

PBS containing 1% BSA and 0.05% Tween 20
Assay

N/A
PubMed ID 30477331
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_448 DNA TAACTCACTCCATACTCACTTGCTGATTCGCCAACAACACACCCTTAAACAGTCCC 56.58%
Apta_796 DNA GTGCTGGATGTCACCTCCACTCACCACCTCTTCTCCGCTCCTCGTCATGACACATCCAG 55.26%
Apta_944 DNA ATACGACTCACTATTAGGGACAAAGCTGACAACCCTTTCATAATCTAACTACATTTATGTGCTAGACTACTGACTAC 54.55%
Apta_556 DNA GGCTCTCGGGACGACATGGATTTTCCATCAACGAAGTGCGTCCGTCCC 53.95%
Apta_890 DNA GGCGGCCGTGAAATTTGCCAAATGCCGTCTTGGCTTTCGCCCAATGTATCCTGGGTGTTC 53.95%
Apta_1232 DNA GGCCACACAAACAACATGACAACACGTCTCACATAACGCCCACGTGCTGCCGCCTCATCG 53.95%
Apta_1234 DNA TGTACCGTCTGAGCGATTCGTACTGTGGGCACCAATCGTACCCAATACTTGCGAATCAGCCAGTCAGTGTTAAGGAGTGC 53.75%
Apta_1031 DNA GGAGACCGCTTAAGCTTAAAGGAGCGGTTACGAATGCGATGACTTAGGTACCATTGCACTACGGTACCTAAACAGTTCCTTTGGATCCGAATTCGCCGC 53.54%
Apta_554 DNA TGTACCGTCTGAGCGATTCGTACCATTAGTGGGTGCTCCTTACCTGATGGTCATCTAGCCAGTCAGTGTTAAGGAGTGC 53.16%
Apta_932 DNA ATACGACTCACTATTAGGGATGTCCACCATATAGATCGATTTAAGTCCCTCGTTATTAATGCTAGACTACTGACTACAA 53.16%
Apta_741 DNA ATCGTCTGCTCCGTCCAATAGCCTCACCCTGCATAATTTATAGACTACACTTAGGAATCGCTGCATTTGGTGTGAGGTCGTGC 53.01%
Apta_743 DNA ATCGTCTGCTCCGTCCAATATCCGAGCAAGAACTCATATTGCATTATTTATAGCTACGCGCTGCATTTGGTGTGAGGTCGTGC 53.01%
Apta_461 DNA CGCTCGGCTTCACGAGATTCGTGTCGTTGTGTCCTGTACCCGCCTTGACCAGTCACTCTAGAGCATCCGGACTG 52.63%
Apta_573 DNA CGTACAGTGGGCTATATTGCTGACGTAAGAGCTGCTTTCAATGCATTGGCATAGATGTCA 52.63%
Apta_607 DNA TGAGGCGGGTGGGTGGGTTGAATATGCTGATTACCCCATCGGAGAACGTTAAGGCGCTTC 52.63%
Apta_608 DNA TGAGGCGGGTGGGTGGGTTGAATACGCTGATCACCCCATCGGAGAACGTTAAGGCGCTTT 52.63%
Apta_662 DNA GGCGCCAAACAGGACCACCATGACAATTACCCATACCACCTCATTATGCCCCATCTCCGC 52.63%
Apta_721 DNA CTCTCGGGACGACCGCGGTAGTCTTAACCTAAAGCGGTGTCAGGTCGTCCC 52.63%
Apta_737 DNA ATCGTCTGCTCCGTCCAATAGTGCATTGAAACTTCTGCATCCTCGTTTGGTGTGAGGTCGTGC 52.63%
Apta_740 DNA ATCGTCTGCTCCGTCCAATAAACCTGCATAATTTATAAGTCTAGACTGCTGCATTTGGTGTGAGGTCGTGC 52.63%

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AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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