Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 965
Aptamer sequence: GGGGGGGTGAGACATCGGGCATGTTCATGGGTGGGGGGTA
Target unique ID: Other-13
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_879 | aptamer A4 | Other | Ara h 1 | 1770 nM | 25 mM TRIS, 192 mM glycine, and 5 mM K2HPO4 (TGK pH 8.3) | 23318547 |
Structure information of aptamer
| Aptamer Sequence: | GGGGGGGTGAGACATCGGGCATGTTCATGGGTGGGGGGTA |
| The optimal secondary structure in dot-bracket notation: | ......(((((.(((.....))))))))............ |
| The centroid secondary structure in dot-bracket notation: | ......((((..(((.....))).))))............ |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_879 | Description | aptamer A4 |
| Aptamer chemistry | DNA | Length | 40 nt |
| GC content | 65.0% | Molecular weight | 12,650.08 Da |
| Molarity of 1 μg/μl solution | 79.05 μM | Number of G-quadruplexes | 3 |
| G-Score | 60 | Function | Aptasensor |
| Sequence | GGGGGGGTGAGACATCGGGCATGTTCATGGGTGGGGGGTA | ||
| Applications | FO-SPR biosensing of peanut allergens in food matrices | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-13 | Name | Ara h 1 |
Activity data
|
No relevant experimental diagram |
Interaction ID | 965 |
| Target type | Other | |
| Target unique ID | Other-13 | |
| Activity | 1770 nM | |
| Binding Conditions/Buffer | 25 mM TRIS, 192 mM glycine, and 5 mM K2HPO4 (TGK pH 8.3) |
|
| Assay | N/A |
|
| PubMed ID | 23318547 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_755 | DNA | GGGGAGGGAGACACAGTCATGGAGCAGTTATTAGGGTGTACCGGGTGTAGT | |
| Apta_493 | DNA | GGGGTGGTGGGTTCTTTTTGTGGTATTGGTGTGGGGGGCA | |
| Apta_595 | DNA | AGCGAGGGCGGTGTCCAACAGCGGTTTTTTCACGAGGAGGTTGGCGGTGG | |
| Apta_10 | DNA | GGGGGGGGTGGCTGGGCGGGGTGGG | |
| Apta_46 | DNA | CGGGTGGGAGTTGTGGGGGGGGGTGGGAGGGTT | |
| Apta_77 | DNA | GGTGTGGGCGACATGGGGGTTGGTGGTGTAGGAGCGCCAT | |
| Apta_1189 | DNA | GCGGGCGGGGGGAGGGCGGCCGTGGGCTGCGAGTGGGAGG | |
| Apta_565 | DNA | GCGGGGTTGGGCGGGTGGGTTCGCTGGGCAGGGGGCGAGTG | |
| Apta_746 | DNA | AGAGTGGGGGGGTGGGTGGATTTGACAGGTGGCATGCTGGAGAGT | |
| Apta_245 | DNA | ACAGGGGTGTGGGGACAGGGGTGTGGGG | |
| Apta_264 | DNA | GGCGTTGTCGGGCGCAGGTGTAGGCCTCGTGGTGGTGGGT | |
| Apta_616 | DNA | GGTGCGGGTAGGGATGAGGGCGGGTCGGGTTGAGTGTGAGCTTAGGGGtGGCGGATCTAC | |
| Apta_679 | DNA | CAGGTGGCAGATCGGGTGTGGGTGGCCTGG | |
| Apta_929 | DNA | GAGTGGGATGGATAGAGAATAAGTGTGGAGTGGAAGGTGA | |
| Apta_1188 | DNA | CGGGCGGGGCGTGGGGTGTTGGAGTGGAGGGCGGGGCGGC | |
| Apta_1186 | DNA | AGGGGGTTTTGGTGGGGGGGGCTGGGTTGTCTTGGGGGTGGGCT | |
| Apta_940 | DNA | TGTGCGGGGGAGGGGAGTGGCGCTGTTGGTGCGGGTATAGCGCGTGGTGT | |
| Apta_753 | DNA | GGGCACAGACGGAAGATGAGAATTGTGGGGCTTAGTATAGTGAGGTGCGTGT | |
| Apta_217 | DNA | CGCCTGATTAGCGATACTCAGGCGTTGGGTGGGTGGGTGGG | |
| Apta_484 | DNA | CAGGGAGGGACAGGGCGGGAATTTGTATGATGGTTCGTTTGCTCG |
DEV TOOL
 |
 |
 |
 |