Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 1212
Aptamer sequence: GACAAGGATAAATCCTTCAATGAAGTGGGTCACTCATCTGTGA
Target unique ID: 446220
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_1152 aptamer against cocaine Molecule Cocaine N/A 1.0 M NaCl, 5 mM MgCl2 and 1 mM ethylenediamine tetraacetic acid (EDTA), pH 7.0 26876971
Structure information of aptamer
Aptamer Sequence: GACAAGGATAAATCCTTCAATGAAGTGGGTCACTCATCTGTGA
The optimal secondary structure in dot-bracket notation: ...(((((....)))))............((((......))))
The centroid secondary structure in dot-bracket notation: ...(((((....)))))...((..(((...))).)).......
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_1152 Description aptamer against cocaine
Aptamer chemistry DNA Length 43 nt
GC content 41.9% Molecular weight 13,274.57 Da
Molarity of 1 μg/μl solution 75.33 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Target detection
Sequence GACAAGGATAAATCCTTCAATGAAGTGGGTCACTCATCTGTGA
Applications Detection of cocaine
Target information
Type Detail Type Detail
PubChem ID 446220 Molecular name Cocaine
Molecular formula C17H21NO4 Molecular weight 303.35
IUPAC name methyl (1R,2R,3S,5S)-3-benzoyloxy-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate InChIKey ZPUCINDJVBIVPJ-LJISPDSOSA-N
LogP 1.868 Topological polar surface area 55.84
Hydrogen bond acceptor 5 Hydrogen bond donor 0

Synonym(s):
cocaine; Kokain; Benzoylmethylecgonine; Neurocaine; Cocain; L-Cocaine; Cocaina; Coke; beta-Cocain; (-)-Cocaine; Methyl Benzoylecgonine; l-Cocain; Eritroxilina; Erytroxylin; Kokayeen; Bernies; Burese; Corine; Kokan; Leaf; Dama blanca; Pimp's drug; Cocaine free base; 1-Cocaine; White girl or lady; cocainum; Star-spangled powder; Cocaine, l-; 50-36-2; UNII-I5Y540LHVR; Bernice; Cholly; Cecil; Girl; Happy dust; Gold dust; Star dust; Ecgonine, methyl ester, benzoate (ester); CHEBI:27958; 2-beta-Carbomethoxy-3-beta-benzoxytropane; HSDB 6469; 3-Tropanylbenzoate-2-carboxylic acid methyl ester; I5Y540LHVR; (1R,2R,3S,5S)-2-Methoxycarbonyltropan-3-yl benzoate; 2-beta-Tropanecarboxylic acid, 3-beta-hydroxy-, methyl ester, benzoate (ester); methyl (1R,2R,3S,5S)-3-(benzoyloxy)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate; Crack cocaine; Methyl 3beta-hydroxy-1alphaH,5alphaH-tropane-2beta-carboxylate benzoate (ester); COC; Jam; Crack; Flake; Blow; Lady; Snow; Toot; Happy trails; Green gold; Nose candy; 1-alpha-H,5-alpha-H-Tropane-2-beta-carboxylic acid, 3-beta-hydroxy-, methyl ester, benzoate; 2-Methyl-3beta-hydroxy-1alphaH,5alphaH-tropane-2beta-carboxylate benzoate (ester); 3-(Benzoyloxy)-8-methyl-8-azabicyclo-(3.2.1)octane-2-carboxylic acid methyl ether; 3beta-Hydroxy-1alphaH,5alphaH-tropane-2beta-carboxylic acid methyl ester benzoate; methyl [1R-(exo,exo)]-3-(benzoyloxy)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate; Methyl 3-beta-hydroxy-1-alpha-H,5-alpha-H-tropane-2-beta-carboxylate benzoate (ester); C" Carrie; Blow [Street Name]; Girl [Street Name]; Lady [Street Name]; Rock [Street Name]; Toot [Street Name]; Cecil [Street Name]; Flake [Street Name]; Sleighride; Badrock; Bazooka; Bernice [Street Name]; Blizzard; Cabello; Charlie; Cocktail; Goofball; Moonrocks; Blast; Candy; Caviar; Freeze; Heaven; Snort; Trails; Coca; Cola; Hell; Toke; Yeyo; Bouncing Powder; Chicken Scratch; Happy powder; Florida Snow; Sweet Stuff; Gold dust [Street Name]; Prime Time; C Carrie; Happy dust [Street Name]; 8-Azabicyclo(3.2.1)octane-2-carboxylic acid, 3-(benzoyloxy)-8-methyl-, methyl ester, (1R-(exo,exo))-; Foo Foo; Kibbles n' Bits; methyl (1S,3S,4R,5R)-3-benzoyloxy-8-methyl-8-azabicyclo[3.2.1]octane-4-carboxylate; Snow (birds); G-Rock; [1R-(exo,exo)]-3-(benzoyloxy)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic acid, methyl ester; methyl (1R,2R,3S,5S)-8-methyl-3-[(phenylcarbonyl)oxy]-8-azabicyclo[3.2.1]octane-2-carboxylate; Cholly [Street Name]; Cocaine [USP:BAN]; Star dust [Street Name]; Green gold [Street Name]; 2beta-Carbomethoxy-3beta-benzoxytropane; Happy trails [Street Name]; Line; EINECS 200-032-7; Cocaine (-); 1i7z; Epitope ID:158626; SCHEMBL21930; CHEMBL370805; GTPL2286; IDS-NC-004; DEA No. 9041; DTXSID2038443; BDBM22418; (1R,2R,3S,5S)-2-(methoxycarbonyl)tropan-3-yl benzoate; 1q72; Cocaine 0.1 mg/ml in Acetonitrile; Cocaine 1.0 mg/ml in Acetonitrile; ZINC3875336; RX0041; AKOS015965554; DB00907; RX-0041; C01416; Q41576; (1R,5S,8R)-2beta-(Methoxycarbonyl)-3beta-(benzoyloxy)tropane; [1R-(exo,exo)]-3-(Benzoyloxy)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic Acid; Cocaine solution, 1.0 mg/mL in acetonitrile, ampule of 1 mL, certified reference material; (1beta,5beta,8-anti)-3beta-Benzoyloxy-8-methyl-8-azabicyclo[3.2.1]octane-2beta-carboxylic acid methyl ester; 1-alpha-H,5-alpha-H-Tropane-2-beta-carboxylic acid, 3-beta-hydroxy-, methyl ester, benzoate (ester) (8CI); 8-Azabicyclo[3.2.1]octane-2-carboxylic acid, 3-(benzoyloxy)-8-methyl-, methyl ester, (1R,2R,3S,5S)- (9CI)

Activity data

No relevant experimental diagram

Interaction ID 1212
Target type Molecule
Target unique ID 446220
Activity N/A
Binding Conditions/Buffer

1.0 M NaCl, 5 mM MgCl2 and 1 mM ethylenediamine tetraacetic acid (EDTA), pH 7.0

Assay

N/A

PubMed ID 26876971
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_586 DNA GGGAGACAAGGAAAATCCTTCAATGAAGTGGGTCGACA 67.44%
Apta_1172 DNA GACGCCACTGACTACCCCAGTATCTCTTCAACGCGTATTGAAGTCAGTCGGTCGTCA 56.14%
Apta_871 DNA CCAACCACACATCCTTCCATCGACATGGACCCACCGTTCC 55.81%
Apta_421 DNA ATCTACGAATTCATCAGGGCTAAAGAGTGCAGAGTTACTTAGCCCGTGA 55.10%
Apta_158 DNA CACAGGCTACGGCACGTAGAGCATCACCATGATCCTGTG 53.49%
Apta_339 DNA CACAGGCTACGGCACGTAGAGCATCACCATGATCCTGTGT 53.49%
Apta_929 DNA GAGTGGGATGGATAGAGAATAAGTGTGGAGTGGAAGGTGA 53.49%
Apta_1139 DNA AATAGGGTAAAAAAAAAAAGTTGGTCCTATG 53.49%
Apta_1269 DNA TAGCACACAACCCTTTGATTGGGATATCTCATCCCTCG 53.49%
Apta_661 DNA GGACAACATAGGAAAAAGGCTCTGCTACCGGATCCCTGTTGTATGGGCATATCTGTTGAT 53.33%
Apta_335 DNA ACCGGGCGTACACCGTCGCGGCACATGTCTGAATGCGTTTAGTCTCTGTG 52.00%
Apta_975 DNA AGACATAGTACATAACCGATCAATGAACATTTAATTAAATGGTGGTATCC 52.00%
Apta_1213 DNA GGACTTGAAGAAAAGGGCGACACGCGAAGTCGATGTCGCGTCTGCCTGAAGTCA 51.85%
Apta_573 DNA CGTACAGTGGGCTATATTGCTGACGTAAGAGCTGCTTTCAATGCATTGGCATAGATGTCA 51.67%
Apta_686 DNA GGTCACCAACAACAGGGAGCGCTACGCGAAGGGTCAATGTGACGTCATGCGGATGTGTGG 51.67%
Apta_393 DNA AGGAGGATAGTTCGGTGGCTGTTCAGGGTCTCCTCCT 51.16%
Apta_580 DNA ATGCGGGTATATGGTGCGAGAAAACAAGGGGCATACTGGA 51.16%
Apta_730 DNA ACCAAACACAGATGCAACCTGACTTCTAACGTCATTTGGTG 51.16%
Apta_946 DNA TACCGGGTAATATGCACACATGCTGATAGCAAGCAATGCA 51.16%
Apta_1026 DNA GGGGGGTGTATCGTTGACGAGTTGCGCGTGCGTCTCGTG 51.16%