Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 586
Aptamer sequence: TGTACCGTCTGAGCGATTCGTACGAACGGCTTTGTACTGTTTGCACTGGCGGATTTAGCCAGTCAGTGTTAAGGAGTGC
Target unique ID: 2256
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_553 R12.23 Molecule Atrazine 0.62 nM 500 μL of buffer consisting of 100 mM sodium chloride, 20 mM Tris-HCl, and 2 mM magnesium chloride 25196435
Structure information of aptamer
Aptamer Sequence: TGTACCGTCTGAGCGATTCGTACGAACGGCTTTGTACTGTTTGCACTGGCGGATTTAGCCAGTCAGTGTTAAGGAGTGC
The optimal secondary structure in dot-bracket notation: ....((((.((.(((...))).)).))))....(((((.(((((((((((((......)).))))))).)))).)))))
The centroid secondary structure in dot-bracket notation: ....((((.((.(((...))).)).))))....(((((.(((((((((((((......)).)))))))).))).)))))
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_553 Description R12.23
Aptamer chemistry DNA Length 79 nt
GC content 50.6% Molecular weight 24,464.63 Da
Molarity of 1 μg/μl solution 40.88 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Aptasensor
Sequence TGTACCGTCTGAGCGATTCGTACGAACGGCTTTGTACTGTTTGCACTGGCGGATTTAGCCAGTCAGTGTTAAGGAGTGC
Applications Rapid atrazine detection in environmental samples
Target information
Type Detail Type Detail
PubChem ID 2256 Molecular name Atrazine
Molecular formula C8H14ClN5 Molecular weight 215.68
IUPAC name 6-chloro-4-N-ethyl-2-N-propan-2-yl-1,3,5-triazine-2,4-diamine InChIKey MXWJVTOOROXGIU-UHFFFAOYSA-N
LogP 1.777 Topological polar surface area 62.73
Hydrogen bond acceptor 5 Hydrogen bond donor 2

Synonym(s):
atrazine; 1912-24-9; Gesaprim; Oleogesaprim; Chromozin; Aktikon; Atrazin; Argezin; Atazinax; Atranex; Atrasine; Fenamin; Fenatrol; Gesoprim; Hungazin; Pitezin; Primatol; Primaze; Radazin; Strazine; Zeazine; Aatrex; Candex; Cyazin; Inakor; Vectal; Wonuk; Zeazin; Cekuzina-T; Actinite PK; Aktinit A; Atratol A; Aktikon PK; Aktinit PK; Weedex A; Crisatrina; Crisazine; Fenamine; Aatram; Akticon; Atrataf; Atratol; Griffex; Radizin; Zeapos; Atred; Atrex; Primatol A; Hungazin PK; Aatrex nine-O; Vectal SC; Herbatoxol; Zeopos; Triazine A 1294; Aatrex 4L; Farmco atrazine; Gesaprim 50; Aatrex 80W; Aneldazin; Gesaprin; Radizine; Azoprim; Maizina; 2-Chloro-4-ethylamino-6-isopropylamino-1,3,5-triazine; Geigy 30,027; Shell atrazine herbicide; 2-Chloro-4-ethylamino-6-isopropylamino-s-triazine; Hungazin (VAN); 1,3,5-Triazine-2,4-diamine, 6-chloro-N-ethyl-N'-(1-methylethyl)-; Aatram 20G; Ceasin 50; Crisamina; Farmozine; Laddock; Mebazine; Fogard; 2-Chloro-4-ethylamineisopropylamine-s-triazine; 6-Chloro-N-ethyl-N'-(1-methylethyl)-1,3,5-triazine-2,4-diamine; 2-Ethylamino-4-isopropylamino-6-chloro-s-triazine; A 361; Aatrex 4LC; Atrazine [ANSI:BSI:ISO]; Atraflow; Primoleo; Zeaphos; Attrex; Atraflow plus; s-Triazine, 2-chloro-4-(ethylamino)-6-(isopropylamino)-; UNII-QJA9M5H4IM; G 30027; Radazin T; Atrazine 4l; Griffex 4l; Atrazine 80W; Azinotox 500; 1-Chloro-3-ethylamino-5-isopropylamino-s-triazine; 2-Chloro-4-(2-propylamino)-6-ethylamino-s-triazine; AI3-28244; s-Triazine, 2-chloro-4-ethylamino-6-isopropylamino-; 2-Aethylamino-4-chlor-6-isopropylamino-1,3,5-triazin; 1-Chloro-3-ethylamino-5-isopropylamino-2,4,6-triazine; 6-chloro-N-ethyl-N'-isopropyl-1,3,5-triazine-2,4-diamine; 2-Chloro-4-(ethylamino)-6-(isopropylamino)-1,3,5-triazine; 6-Chloro-N2-ethyl-N4-isopropyl-1,3,5-triazine-2,4-diamine; QJA9M5H4IM; 2-CHLORO-4-ISOPROPYLAMINO-6-ETHYLAMINO -1,3,5-TRIAZINE; C8H14ClN5; 1,3,5-Triazine-2,4-diamine, 6-chloro-N-ethyl-N'-(1-methylethyl)- (9CI); 2-Chloro-4-(ethylamino)-6-(isopropylamino)-s-triazine; DTXSID9020112; CHEBI:15930; 2-Aethylamino-4-chlor-6-isopropylamino-1,3,5-triazin [German]; 2-Aethylamino-4-isopropylamino-6-chlor-1,3,5-triazin [German]; 6-chloro-N-ethyl-N'-(propan-2-yl)-1,3,5-triazine-2,4-diamine; 6-chloro-4-N-ethyl-2-N-propan-2-yl-1,3,5-triazine-2,4-diamine; 1,3,5-Triazine-2,4-diamine, 6-chloro-N2-ethyl-N4-(1-methylethyl)-; MFCD00041810; 2-Aethylamino-4-isopropylamino-6-chlor-1,3,5-triazin; 1-Chloro-3-(ethylamino)-5-(isopropylamino)-s-triazine; 2-Chloro-4-(2-propylamino)-6-(ethylamino)-s-triazine; 6-Chloro-4-(ethylamino)-2-(isopropylamino)-s-triazine; 2-CHLORO-4-ISOPROPYLAMINO-6-ETHYLAMINO-1,3,5-TRIAZINE; 102029-43-6; DSSTox_CID_112; 6-chloro-2-N-ethyl-4-N-(propan-2-yl)-1,3,5-triazine-2,4-diamine; DSSTox_RID_75374; DSSTox_GSID_20112; Atrazine, analytical standard; Caswell No. 063; 1-Chloro-3-(ethylamino)-5-(isopropylamino)-2,4,6-triazine; SMR000255992; CAS-1912-24-9; CCRIS 1025; HSDB 413; EINECS 217-617-8; EPA Pesticide Chemical Code 080803; NSC 163046; BRN 0612020; Zeapho; Fermco atrazine; Primitol A; Atrazine solution; Oleogesaprim 200; Gesaprim 500; 2-CHLORO-4-ETHYLAMINO-6-ISOPROPYLAMINO-sym-TRIAZINE; Spectrum_001821; SpecPlus_000422; 6-Chloro-N4-ethyl-N2-isopropyl-1,3,5-triazine-2,4-diamine; Spectrum2_001880; Spectrum3_000821; Spectrum4_000661; Spectrum5_001954; bmse000835; EC 217-617-8; Oprea1_839865; SCHEMBL36936; BSPBio_002341; KBioGR_001061; KBioSS_002326; SPECTRUM330029; MLS000389718; MLS001055469; BIDD:ER0403; CHEMBL15063; DivK1c_006518; 2-Chloro-4-(ethylamino)-6-(isopropylamino)triazine; SPBio_001760; 2-chloro-6-ethylamino-4-isopropylamino-1,3,5-triazine; SCHEMBL21045984; KBio1_001462; KBio2_002323; KBio2_004891; KBio2_007459; KBio3_001841; HMS2541C15; HMS3604N05; BCP12774; HY-N7091; ZINC3078958; Atrazine 100 microg/mL in Toluene; Tox21_201986; Tox21_301021; CCG-39357; NSC163046; s5171; STL115099; Atrazine 10 microg/mL in Cyclohexane; Atrazine 1000 microg/mL in Acetone; 6-Chloro-N~2~-ethyl-N~4~-(propan-2-yl)-1,3,5-triazine-2,4-diamine; AKOS001023901; AM84660; Atrazine 10 microg/mL in Acetonitrile; DB07392; MCULE-1965771911; NSC-163046; Atrazine 100 microg/mL in Acetonitrile; NCGC00090784-01; NCGC00090784-02; NCGC00090784-03; NCGC00090784-04; NCGC00090784-05; NCGC00090784-06; NCGC00090784-07; NCGC00090784-08; NCGC00090784-09; NCGC00090784-10; NCGC00254923-01; NCGC00259535-01; AC-12050; AC-12056; AS-13785; S334; WLN: T6N CN ENJ BMY1&1 DM2 FG; DB-044759; Atrazine, PESTANAL(R), analytical standard; CS-0077590; FT-0602866; FT-0662335; C06551; F21351; J10310; 33270-EP2274983A1; 33270-EP2305655A2; 33270-EP2305658A1; 33270-EP2305662A1; 33270-EP2311815A1; 33270-EP2371823A1; 029A436; A813475; AG-668/02857017; Q408652; 2-Aethylamino-4-chlor-6-isopropylamino-1,5-triazin; 2-chloro-4-ethyl-amino-6-isopropylamino-s-triazine; J-012357; Atrazine, certified reference material, TraceCERT(R); BRD-K45535217-001-02-2; 1-Chloro-3-(ethylamino)-5-(isopropylamino)-2,6-triazine; 2-Chloro-4-(ethylamino)-6-(isopropylamino)-1,5-triazine; Atrazine solution 1000 mug/mL in methyl tert-butyl ether; 1,5-Triazine-2,4-diamine, 6-chloro-N-ethyl-N'-(1-methylethyl)-; 6-chloranyl-N4-ethyl-N2-propan-2-yl-1,3,5-triazine-2,4-diamine; 6-Chloro-N-ethyl-N'-(1-methylethyl)-1,5-triazine-2,4-diamine; 6-chloro-N2-ethyl-N4-(propan-2-yl)-1,3,5-triazine-2,4-diamine; 6-chloro-N4-ethyl-N2-propan-2-yl-1,3,5-triazine-2,4-diamine; N-[4-chloro-6-(ethylamino)-1,3,5-triazin-2-yl]-N-isopropylamine; 6-chloro-4-N-ethyl-2-N-(propan-2-yl)-1,2,3,4-tetrahydro-1,3,5-triazine-2,4-diimine; Atrazine solution, 100 mug/mL in methanol, PESTANAL(R), analytical standard; Atrazine solution, certified reference material, 1000 mug/mL in methyl tert-butyl ether

Activity data

No relevant experimental diagram

Interaction ID 586
Target type Molecule
Target unique ID 2256
Activity 0.62 nM
Binding Conditions/Buffer

500 μL of buffer consisting of 100 mM sodium chloride, 20 mM Tris-HCl, and 2 mM magnesium chloride

Assay

N/A

PubMed ID 25196435
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_555 DNA TGTACCGTCTGAGCGATTCGTACGGATTGGGTTTGCACTTTACCTGCGGTGCATCGCAGCCAGTCAGTGTTAAGGAGTGC 80.00%
Apta_1235 DNA TGTACCGTCTGAGCGATTCGTACGATCGGGTCGGGGTCTATTTTAGGGCCATTTGGCAGCCAGTCAGTGTTAAGGAGTGC 78.75%
Apta_554 DNA TGTACCGTCTGAGCGATTCGTACCATTAGTGGGTGCTCCTTACCTGATGGTCATCTAGCCAGTCAGTGTTAAGGAGTGC 78.48%
Apta_1234 DNA TGTACCGTCTGAGCGATTCGTACTGTGGGCACCAATCGTACCCAATACTTGCGAATCAGCCAGTCAGTGTTAAGGAGTGC 75.00%
Apta_1187 DNA TGTACCGTCTGAGCGATTCGTACTTTATTCGGGAAGGGTATCAGCGGGGTTCAACAAGCCAGTCAGTGTTAAGGAGTGC 70.89%
Apta_738 DNA ATCGTCTGCTCCGTCCAATACCTGCATATACACTTTGCATGTGGTTTGGTGTGAGGTCGTGC 56.96%
Apta_349 DNA ATACCAGCTTATTCAATTAGACGAGTTTTATTCATTTTCCATGTCGTAGCTTACCGTGAGATAGTAAGTGCAATCT 55.70%
Apta_804 DNA GCGGGATCCTATGACGCATTGACCCACAACACACTACTGTCGCTCGGTTCGAACTTCGTGCGACTGTTCCCTATAGTGAGTCGTATTAGAATTCCGC 54.64%
Apta_655 DNA CCTGCACCTCGTCCAGCATGCACACCGATGGCGGTCCTGTTTTACGGTAGCTTATATGCAGGGGGTGTGCGTG 54.43%
Apta_737 DNA ATCGTCTGCTCCGTCCAATAGTGCATTGAAACTTCTGCATCCTCGTTTGGTGTGAGGTCGTGC 54.43%
Apta_891 DNA GGAGACCGTACCATCTGTTCGTGGAAGCGCTTTGCTCGTCCATTAGCCTTGTGCTCGTGC 54.43%
Apta_1231 DNA ACCACCGGCCCGAGATAGTCTAGACCACTATGTTGTTGTGCTTACTGCTGTGTGGTGTGG 54.43%
Apta_405 DNA TCTAGCCCACTGCATAGAGGTAGCCACGTATGTGGGTGTTACCCATTCGTAGCTACCGGTG 53.16%
Apta_571 DNA ACCTGCGATAGGTAGTTTGTTTCTGTTGCCCTAGCGTCCGTCGTAACAAGTCA 53.16%
Apta_653 DNA CCTGCACCTCGTCCAGCATCCGATGGCGGTCCTGTTTTACGGTAGCTTATATGCAGGGGGGTG 53.16%
Apta_726 DNA TACCAGTGCGATGCTCAGGCCGATGTCAACTTTTTCTAACTCACTGGTTTTGCCTGACGCATTCGGTTGAC 53.16%
Apta_883 DNA CGTACCGGCCAGTGATTACGACGAGACGAGCTTATGCGTATTGATGCCTAACTATCTACA 53.16%
Apta_1102 DNA TACGACTCACTATAGGGATCCGTGACTGTACGGGCTCAGTCGTTACTTGAGAGTTGAATTCCCTTTAGTGAGGGTT 53.16%
Apta_584 DNA GTACCAGCTTATTCAATTACACGGACAGAGGGTAGCGGCTCTGCGCATTGAGTTGCTGCGGGCTGAAGCGCGGTACATGGGAGATAGTATGTTCATCAG 52.53%
Apta_1031 DNA GGAGACCGCTTAAGCTTAAAGGAGCGGTTACGAATGCGATGACTTAGGTACCATTGCACTACGGTACCTAAACAGTTCCTTTGGATCCGAATTCGCCGC 52.53%