Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 958
Aptamer sequence: ACCGCCTTCCACCGTTCTCCACCACCCCTCAAACAACCCT
Target unique ID: Other-10
| Aptamer ID | Aptamer descriptor | Target chemistry | Target name | Affinity | Binding Conditions/Buffer | PubMed ID |
|---|---|---|---|---|---|---|
| Apta_872 | C9S | Other | antivesicular stomatitis virus polyclonal antibodies | N/A | DPBS | 23016897 |
Structure information of aptamer
| Aptamer Sequence: | ACCGCCTTCCACCGTTCTCCACCACCCCTCAAACAACCCT |
| The optimal secondary structure in dot-bracket notation: | ........................................ |
| The centroid secondary structure in dot-bracket notation: | ........................................ |
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Aptamer ID | Apta_872 | Description | C9S |
| Aptamer chemistry | DNA | Length | 40 nt |
| GC content | 60.0% | Molecular weight | 11,906.66 Da |
| Molarity of 1 μg/μl solution | 83.99 μM | Number of G-quadruplexes | No QGRS found |
| G-Score | N/A | Function | Targeted therapy |
| Sequence | ACCGCCTTCCACCGTTCTCCACCACCCCTCAAACAACCCT | ||
| Applications | Shielding Virus from Neutralizing Antibodies | ||
Target information
| Type | Detail | Type | Detail |
|---|---|---|---|
| Target ID | Other-10 | Name | antivesicular stomatitis virus polyclonal antibodies |
Activity data
|
No relevant experimental diagram |
Interaction ID | 958 |
| Target type | Other | |
| Target unique ID | Other-10 | |
| Activity | N/A | |
| Binding Conditions/Buffer | DPBS |
|
| Assay | N/A |
|
| PubMed ID | 23016897 |
Similar aptamers
| Aptamer ID | Aptamer chemistry | Sequence | Similarity |
|---|---|---|---|
| Apta_448 | DNA | TAACTCACTCCATACTCACTTGCTGATTCGCCAACAACACACCCTTAAACAGTCCC | |
| Apta_166 | DNA | ATCGCGCTCTCCTGCTTAAGCAGCTATCAAATAGCCCACT | |
| Apta_254 | DNA | CCCGCTGTTCTCCCCCCCCCGCTGAGATCCCTGT | |
| Apta_1084 | DNA | TTCCCTCCTCTGTTGTTCCCCCCTCCTCTC | |
| Apta_252 | DNA | CCCTTACCTACTCTGCTCCCCCCCCCCCTCGGCTGC | |
| Apta_473 | DNA | CCCTGCACTCGCAATGGCCCCTCTACACCACAAACGGACA | |
| Apta_1264 | DNA | CAACGATCGTACCACAGTACCCACCCACCAGCCCCAACATCATGCCCATGCGTCGGTGTG | |
| Apta_777 | DNA | GAGCCCTATCTCACACCGCACCCGCAAACTATCATCCTACATG | |
| Apta_989 | DNA | ATGCGGGTACATCTCTCCAACCAGTCAAACTGCTATGATAAGACCTCATTCAACCCCGGTA | |
| Apta_187 | DNA | ACCAACCCTTTACCTCTGAGATCTCCCAAT | |
| Apta_249 | DNA | CCCTGTTCCCCCTCCGCCGCTTGACTCTCC | |
| Apta_335 | DNA | ACCGGGCGTACACCGTCGCGGCACATGTCTGAATGCGTTTAGTCTCTGTG | |
| Apta_395 | DNA | AATCCACGTATCGACTAGCTCAAACCAGCCTGATAGAGCCATTCGCTTTA | |
| Apta_468 | DNA | CTGTAATTGGCGTATGTAACCCAGGCACCAAACACCCCAT | |
| Apta_472 | DNA | CCCCCACATTCAAATGGCCCCCCTACTCAATTACTGCACA | |
| Apta_614 | DNA | AATCGCATTACCTTATACCAGCTTATTCAATTACGTCTGCACATACCAGCTTATTCAATT | |
| Apta_866 | DNA | CTCCTCTGACTGTAACCACGACCGCCTTCCACCGTTCTCCACCACCCCTCAAACAACCCTGCATAGGTAGTCCAGAAGCC | |
| Apta_1192 | DNA | CTTTCTGTCCTTCCGTCACATCCCACGCATTCTCCACAT | |
| Apta_796 | DNA | GTGCTGGATGTCACCTCCACTCACCACCTCTTCTCCGCTCCTCGTCATGACACATCCAG | |
| Apta_990 | DNA | AACCCAACCCCGCACCATTAGTCTAAATTTTCGCGACGGAACACAGCAACAACTCCCCA |
DEV TOOL
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