Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 955
Aptamer sequence: ACTAGGACGCTTGGGAGGGGGGGTGGGGTGTCCGGTCGCG
Target unique ID: Other-10
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_869 C3S Other antivesicular stomatitis virus polyclonal antibodies N/A DPBS 23016897
Structure information of aptamer
Aptamer Sequence: ACTAGGACGCTTGGGAGGGGGGGTGGGGTGTCCGGTCGCG
The optimal secondary structure in dot-bracket notation: (((.((((((((.............)))))))))))....
The centroid secondary structure in dot-bracket notation: .((.((((((((.............)))))))))).....
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_869 Description C3S
Aptamer chemistry DNA Length 40 nt
GC content 72.5% Molecular weight 12,587.02 Da
Molarity of 1 μg/μl solution 79.45 μM Number of G-quadruplexes 3
G-Score 64 Function Targeted therapy
Sequence ACTAGGACGCTTGGGAGGGGGGGTGGGGTGTCCGGTCGCG
Applications Shielding Virus from Neutralizing Antibodies
Target information
Type Detail Type Detail
Target ID Other-10 Name antivesicular stomatitis virus polyclonal antibodies
Activity data

No relevant experimental diagram

 Interaction ID 955
Target type Other
Target unique ID Other-10
Activity N/A
Binding Conditions/Buffer

DPBS
Assay

N/A
PubMed ID 23016897
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_255 DNA TAGCGATACTGCGTGGGTTGGGGCGGGTAGGGCCAGCAGTCTCGT 60.00%
Apta_745 DNA GGTTGCATGCCGTGGGGAGGGGGGTGGGTTTTATAGCGTACTCAG 60.00%
Apta_1185 DNA CAGGGGGTTTTGGTGGGGGGGGCTGGGTTGTCTTGGGGGTGGGCT 60.00%
Apta_282 DNA ATCCATGGGGCGGAGATGAGGGGGAGGAGGGCGGGTACCCGGTTGAT 59.57%
Apta_488 DNA CGACCAGGGTGGGAGGGGGACGGGCTGGCGGCGCGCGGTAATG 58.14%
Apta_748 DNA AGCTTGAGGGTGGGCGGGTGGACGCGGTAGTGGTATATAGGTCGG 57.78%
Apta_750 DNA ATGCGAACAGGTGGGTGGGTTGGGTGGATTGTTCGGCTTCTTGAT 57.78%
Apta_11 DNA AGAGGGGGGGGTCGGGGTGGGTCGC 57.50%
Apta_17 DNA AGGGGGGGGGGTGGGGGTGGGTCCC 57.50%
Apta_20 DNA AGAGGGGGGGGTGGGGGTGGCCTGC 57.50%
Apta_245 DNA ACAGGGGTGTGGGGACAGGGGTGTGGGG 57.50%
Apta_266 DNA TGGATGGTAGCTCGGTCGGGGTGGGTGGGTTGGCAAGTCT 57.50%
Apta_646 DNA TGGAGCTTGGATTGATGTGGTGTGTGAGTGCGGTGCCC 57.50%
Apta_679 DNA CAGGTGGCAGATCGGGTGTGGGTGGCCTGG 57.50%
Apta_683 DNA GCAGTACGATCGGGGGTGGGTGGATGTAGG 57.50%
Apta_706 DNA CCGGCCAAGGGTGGGAGGGAGGGGGCCGG 57.50%
Apta_870 DNA CCGGGGAATCTAGGGGAGGGCGGGTGGGTCAATTGAGCCG 57.50%
Apta_1186 DNA AGGGGGTTTTGGTGGGGGGGGCTGGGTTGTCTTGGGGGTGGGCT 56.82%
Apta_650 DNA GCACACCGATGGCGGTCCTGTTTAGGGGGTGTGCGTGGGGAGGTGCGGTTGC 55.77%
Apta_744 DNA GTGGCCAGTCACTCAATTGGGTGTAGGGGTGGGGATTGTGGGTTG 55.56%

ABOUT

AptaDB is an online database we developed to integrate comprehensive information about aptamer.
The detail of this database is described here:

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