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PEPDIA-INT-056077

Bronze

[Ser7-O-βGlc]dermorp

50

Quality

1

Source DBs

0

Activities

13

Source refs

6

Literature

0

Patents

Integrated record

Sequence and molecular profile

YAFGYPSNH
Indexed sequence9 aa
1YAFGYPSNH

Length

9

Molecular weight

1055.12 Da

Formula

C50H62N12O14

Structure type

-

Synthesis

-

Chirality

-

Family

-

Gene

-

Residue composition

Y
2
A
1
F
1
G
1
P
1
S
1
N
1
H
1

Physicochemical profile

Hydrophobic4

Membrane affinity proxy

Polar2

Solubility proxy

Charged1

Net charge proxy +1

Aromatic4

Binding interaction proxy

Versioned scientific descriptors

Physicochemical properties and standard representations

calculated sequence and structure

Reported properties

Legacy compatibility fields are materialized from the versioned PepDiana computed release; no separate source-reported property is available.

Computed properties

physchem-20260620

Molecular weight

1055.0991 Da

Molecular formula

C50H62N12O14

Theoretical pI

6.7393

Net charge at pH 7

-0.1547

GRAVY

-0.8333

Instability index

60.8778

Aromaticity

0.3333

Topological polar surface area

419.79 Ų

cLogP

-3.593

Hydrogen-bond donors

14

Hydrogen-bond acceptors

15

Rotatable bonds

27

Method: PepDiana sequence/structure descriptor pipeline

Tool: Biopython+RDKit · Biopython 1.85; RDKit 2024.09.6

Calculated: 2026-06-20T11:01:38.358971+00:00

Assumptions: ph=7; termini=free N-terminus and free C-terminus for simple linear peptides; stereochemistry=standard L-amino acids; smiles_length_limit=200

Sequence representations

representations-20260620 · RDKit 2024.09.6

ProForma 2.0

validated simple linear

YAFGYPSNH

HELM 2.0

validated simple linear

PEPTIDE1{Y.A.F.G.Y.P.S.N.H}$$$$V2.0

Canonical SMILES

validated

CC(NC(=O)C(N)Cc1ccc(O)cc1)C(=O)NC(Cc1ccccc1)C(=O)NCC(=O)NC(Cc1ccc(O)cc1)C(=O)N1CCCC1C(=O)NC(CO)C(=O)NC(CC(N)=O)C(=O)NC(Cc1c[nH]cn1)C(=O)O

Isomeric SMILES

validated

C[C@H](NC(=O)[C@@H](N)Cc1ccc(O)cc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)NCC(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)O

Follow-up research

External analysis tools

Run BLASTPSearch similar protein or peptide sequences at NCBI.Search UniProtLook for related UniProtKB entries using the sequence.Search PubMedFind literature context for this peptide record.Search PubChemOpen chemistry search with the canonical SMILES string.

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Research workflow

Citation and local history

BibTeX

@misc{PEPDIA-INT-056077,
  title = {[Ser7-O-βGlc]dermorp},
  author = {{PepDiana Consortium}},
  year = {2026},
  howpublished = {PepDiana Multifunctional Peptide Database},
  url = {http://127.0.0.1:3004/peptides/PEPDIA-INT-056077},
  note = {Accessed from local PepDiana development build}
}

APA-style note

[Ser7-O-βGlc]dermorp. (2026). PepDiana record PEPDIA-INT-056077. PepDiana Multifunctional Peptide Database. http://127.0.0.1:3004/peptides/PEPDIA-INT-056077

This record is saved to local recent-view history so it can reappear on the peptide browser page.

Provenance

Source database records (13)

Source-specific sequence or modification context. One or more source records use a sequence notation that differs from the canonical backbone. Open each raw sequence before interpreting stereochemistry, terminal groups, or non-standard residues.

b3pdb

b3pdb_1141

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_1142

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_1143

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_1144

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0764

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0765

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0766

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0767

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0768

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0769

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0770

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0771

Raw sequence

YaFGYPS-NH2

b3pdb

b3pdb_0772

Raw sequence

YaFGYPS-NH2

Citation trail

Literature (6 records)

{"pubmed_id": "[NA](https://www.ncbi.nlm.nih.gov/pubmed/?term=NA)"}

-

--

Audit surface

Raw annotations and release metadata

Integrated record last updated: 2026-04-15T00:59:13.602083+00:00

Modification summary

No structured modification annotations are available for this record.

Source metadata
[
  {
    "source_db": "b3pdb",
    "organism_name": "Unknown"
  }
]