Aptamer-target interaction descriptor
Aptamer-target interaction information
Interaction ID: 546
Aptamer sequence: GGAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCG
Target unique ID: 3039
Aptamer ID Aptamer descriptor Target chemistry Target name Affinity Binding Conditions/Buffer PubMed ID
Apta_919 GNP DV2 Molecule Dichlorvos 0.85 μM 0.1 M KCl, 5 mM MgCl2, and 10 mM Na-HEPES (pH 7.4) 33074441
Structure information of aptamer
Aptamer Sequence: GGAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCG
The optimal secondary structure in dot-bracket notation: .....................((((((((..((((..............))))...)))))))).
The centroid secondary structure in dot-bracket notation: .....................((((((((..((((..............))))...)))))))).
The MFE structure
The Centroid structure
The mountain plot representation
Aptamer information
Type Detail Type Detail
Aptamer ID Apta_919 Description GNP DV2
Aptamer chemistry DNA Length 65 nt
GC content 55.4% Molecular weight 20,258.03 Da
Molarity of 1 μg/μl solution 49.36 μM Number of G-quadruplexes No QGRS found
G-Score N/A Function Targeted binding
Sequence GGAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCG
Applications The aptamers were able to detect DV in both river water and commercial apple juice
Target information
Type Detail Type Detail
PubChem ID 3039 Molecular name Dichlorvos
Molecular formula C4H7Cl2O4P Molecular weight 220.97
IUPAC name 2,2-dichloroethenyl dimethyl phosphate InChIKey OEBRKCOSUFCWJD-UHFFFAOYSA-N
LogP 2.68 Topological polar surface area 44.76
Hydrogen bond acceptor 4 Hydrogen bond donor 0

Synonym(s):
dichlorvos; 62-73-7; DDVP; 2,2-Dichloroethenyl dimethyl phosphate; Dichlorophos; Divipan; Vapona; Chlorvinphos; Brevinyl; Canogard; Dichlorphos; Equigard; Krecalvin; Lindanmafu; Bibesol; Equigel; Fecama; Herkal; Herkol; Nerkol; Phosvit; Unifos; Nogos; Nuvan; 2,2-Dichlorovinyl dimethyl phosphate; Dichlorman; Dichlorovos; Estrosel; Szklarniak; Vaponite; Vinylofos; Vinylophos; Winylophos; Atgard; Dedevap; Fekama; Marvex; Mopari; Novotox; Tenac; Task; Atgard C; Atgard V; Nogos G; Vapona Insecticide; Dichloorvo; Astrobot; Cekusan; Dichlofos; Panaplate; Tetravos; Apavap; Benfos; Cypona; Unitox; DDVP (insecticide); Insectigas D; Dimethyl 2,2-dichlorovinyl phosphate; Nogos 50; Unifos (pesticide); Derribante; Dichlorfos; Diclorvos; Equiguard; Estrosol; Nefrafos; Deriban; Devikol; Phosphoric acid, 2,2-dichloroethenyl dimethyl ester; TAP 9VP; Fly fighter; Mafu strip; Phosphoric acid, 2,2-dichlorovinyl dimethyl ester; No-pest strip; Fly-die; No-pest; Vapora II; Dimethyldichlorovinyl phosphate; Nuvan 7; O,O-Dimethyl dichlorovinyl phosphate; OMS 14; XLP 30; Dichlorovas; Duravos; Equigand; Verdican; Verdipor; Verdisol; Algard; Dimethyl 2,2-dichloroethenyl phosphate; Unifos 50 EC; NCI-C00113; Nogos 50 EC; Nuvan 100EC; Task tabs; BAY-19149; Dimethyl dichlorovinyl phosphate; Bayer 19149; SD 1750; Brevinyl E-50; DDVF; SD-1750; NSC 6738; NSC-6738; Ethenol, 2,2-dichloro-, dimethyl phosphate; Dimethyl-2,2-dichlorovinyl phosphate; (2,2-Dichloro-vinil)dimetil-fosfato; Brevinyl E 50; UNII-7U370BPS14; (2,2-Dichlor-vinyl)-dimethyl-phosphat; Atgard (TN); Phosphate de dimethyle et de 2,2-dichlorovinyle; Phosphoric acid 2,2-dichloroethenyl dimethyl ester; Vinyl alcohol, 2,2-dichloro-, dimethyl phosphate; O,O-Dimethyl 2,2-dichlorovinyl phosphate; Nuvan 100 EC; ENT-20738; Phosphoric acid 2,2-dichlorovinyl dimethyl ester; Phosphate, 2-2-dichlorovinyl dimethyl; 2,2-Dichloroethenyl phosphoric acid dimethyl ester; (2,2-Dichloor-vinyl)-dimethyl-fosfaat; CHEMBL167911; CHEBI:34690; O,O-Dimethyl-O-(2,2-dichlor-vinyl)-phosphat; NSC6738; (2,2-Dichloor-vinyl)-dimethyl-fosfaat [Dutch]; 7U370BPS14; 2,2-Dimethyldichlorovinyl phosphate; OKO; NCGC00090997-02; Denkavepon; Uniphos; DSSTox_CID_449; O-(2,2-Dichlorvinyl)-O,O-dimethylphosphate; Des (phosphate); DSSTox_RID_75598; DSSTox_GSID_20449; Brevinyl E50; C4H7Cl2O4P; Dichloorvo [Dutch]; Dichlorfos [Polish]; Caswell No. 328; Dichlorvosum; Delevap; Derriban; Mafu; Nuva; Diclorvos [INN-Spanish]; Dichlorvosum [INN-Latin]; CAS-62-73-7; CCRIS 230; Dichlorvos [USAN:INN:BAN]; Dichlorvos (DDVP); UDVF; HSDB 319; BAY-b 4986; (2,2-Dichloor-vinyl)-dimethyl-fosfaat (Dutch); Dichlorvos [BSI:ISO]; EINECS 200-547-7; ENT 20738; EPA Pesticide Chemical Code 084001; BRN 1709141; Dichlorovinphos; Aquaguard; Nuvos; AI3-20738; O,O-Dimethyl O-2,2-dichlorovinyl phosphate; Dichloroethenyl dimethyl phosphate; Prima U; (2,2-Dichloro-vinil)dimetil-fosfato [Italian]; Dichlorvos; DDVP; (2,2-Dichlor-vinyl)-dimethyl-phosphat [German]; O,O-Dwumetylo-O-dwuchlorowinylofosforan [Polish]; Dichlorvos (Vapona); O-(2,2-Dichlorvinyl)-O,O-dimethylphosphat [German]; Dichlorfos(POLISH); 2,2-dichloroethenol dimethyl phosphate; O,O-Dimethyl-O-(2,2-dichlor-vinyl)-phosphat [German]; O,O-Dwumetylo-O-dwuchlorowinylofosforan; Phosphate de dimethyle et de 2,2-dichlorovinyle [French]; Spectrum_001779; Dimethyl O,2-phosphate; 2,2-Dichlorovinyl-O,O-dimethyl phosphate; SpecPlus_000360; Dichlorvos (USAN/INN); o-(2,2-Dichlorvinyl)-O,O-dimethylphosphat; o-(2,O-dimethylphosphat; Spectrum2_001227; Spectrum3_000810; Spectrum4_000650; Spectrum5_001930; 2,2-dichlorovinyl alcohol dimethyl phosphate; 0,2-dichlorovinyl phosphate; 2,2-dichlorovinyl dimethyl phosphoric acid ester; SCHEMBL25067; BSPBio_002279; KBioGR_000999; KBioSS_002260; O,2-dichlor-vinyl)-phosphat; MLS002222471; BIDD:ER0583; DivK1c_006456; SPBio_001074; WLN: GYGU1OPO&O1&O1; DTXSID5020449; KBio1_001400; KBio2_002259; KBio2_004827; KBio2_007395; KBio3_001779; OEBRKCOSUFCWJD-UHFFFAOYSA-; HMS2091C21; dimethyl 2,2-dichlorovinylphosphate; ZINC1853865; Tox21_111052; Tox21_201617; Tox21_300840; BDBM50286926; CCG-39147; MFCD00036123; P5D635; (2, 2-Dichloro-vinil)dimetil-fosfato; (2,2-Dichlorovinyl)-dimethyl-fosfate; AKOS005111045; Tox21_111052_1; DB11397; Dichlorvos 1000 microg/mL in Acetone; MCULE-3173230917; Ethenol,2-dichloro-, dimethyl phosphate; (2, 2-Dichlor-vinyl)-dimethyl-phosphat; NCGC00090997-01; NCGC00090997-03; NCGC00090997-04; NCGC00090997-05; NCGC00090997-06; NCGC00090997-07; NCGC00090997-08; NCGC00090997-09; NCGC00090997-11; NCGC00254743-01; NCGC00259166-01; Dichlorvos 100 microg/mL in Acetonitrile; Dimethyl O,O-dichlorovinyl-2,2-phosphate; P598; SMR000777927; SBI-0052506.P003; 2,2-Dichlorovinyl dimethyl phosphate, 8CI; DB-054265; Dimethyl O, O-dichlorovinyl-2,2-phosphate; 2,2-bis(chloranyl)ethenyl dimethyl phosphate; o-(2, 2-Dichlorvinyl)-O,O-dimethylphosphat; O-O-Dimethyl-O(2,2-dichlorovinyl)phosphate; Dichlorvos, PESTANAL(R), analytical standard; Ethenol, 2, 2-dichloro-, dimethyl phosphate; Phosphoric acid,2-dichlorovinyl dimethyl ester; Vinyl alcohol,2-dichloro-, dimethyl phosphate; 0, 0-Dimethyl 0-2,2-dichlorovinyl phosphate; D03791; 26857-EP2274983A1; 26857-EP2275422A1; 26857-EP2280009A1; 26857-EP2292608A1; 26857-EP2305662A1; 26857-EP2308857A1; 26857-EP2308858A1; 26857-EP2311816A1; 26857-EP2311817A1; 26857-EP2314583A1; 48039-EP2275422A1; 48039-EP2311810A1; AB00053012_02; O,O-Dimethyl-O-(2, 2-dichlor-vinyl)-phosphat; Phosphoric acid,2-dichloroethenyl dimethyl ester; A833962; Q420622; SR-05000001548; SR-05000001548-1; O-(2,2-Dichloroethenyl) O,O-dimethyl phosphate, 9CI; Dichlorvos, United States Pharmacopeia (USP) Reference Standard

Activity data
Interaction ID 546
Target type Molecule
Target unique ID 3039
Activity 0.85 μM
Binding Conditions/Buffer

0.1 M KCl, 5 mM MgCl2, and 10 mM Na-HEPES (pH 7.4)

Assay

The affinity of the developed aptamers towards the DV was measured with ITC

PubMed ID 33074441
Similar aptamers
Aptamer ID Aptamer chemistry Sequence Similarity
Apta_1068 DNA CGGGACAAGACAACGAACGAACAGGAAGAGAACCGGAATGCAGACGTCAGGG 55.38%
Apta_661 DNA GGACAACATAGGAAAAAGGCTCTGCTACCGGATCCCTGTTGTATGGGCATATCTGTTGAT 53.85%
Apta_898 DNA ATACGGGAGCCAACACCAACAAAACTAGCAAATTAGAGCCGTATCGGAGCCTATAGAGCAGGTGTGACGGAT 52.78%
Apta_1213 DNA GGACTTGAAGAAAAGGGCGACACGCGAAGTCGATGTCGCGTCTGCCTGAAGTCA 52.31%
Apta_1228 DNA GGCCACCAAACCACACCGTCGCAACCGCGAGAACCGAAGTAGTGATCATGTCCCTGCGTG 52.31%
Apta_400 RNA GGGAGGACGAUGCGGAUACCAGCGAAUAACUCGCUGAGGAACCCGACUCACAAACAGACGACUCGCUGAGGAUCCGAGA 51.90%
Apta_612 RNA GGGCGACCCUGAUGAGCCUUAGGAUAUGCUUCGGCAGAAGGACGUCGAAACGGUGAAAGCCGUAGGUUGCCC 51.39%
Apta_105 DNA AGCAGCACAGAGGTCAGATGATGCTCTAGGCGAAAGACTTGGCGTAGAACGACGGGAGGCCCTATGCGTGCTACCGTGAA 51.25%
Apta_105 DNA AGCAGCACAGAGGTCAGATGATGCTCTAGGCGAAAGACTTGGCGTAGAACGACGGGAGGCCCTATGCGTGCTACCGTGAA 51.25%
Apta_278 DNA AGCAGCACAGAGGTCAGATGAGGCCTGGTGATCGTGCCCAGGCCATATGAGCAAGGAACCCCTATGCGTGCTACCGTGAA 51.25%
Apta_33 DNA GCGGTAAACTGCGTCCGAAGGGGCTGCAGTGACCCGAATGGGTCCGCCGCGAAGCG 50.77%
Apta_257 DNA GGCAGAAGAAATATCGAAACCCAGAATGGTCGGCCAGGCG 50.77%
Apta_262 DNA ACGGACTCGCAAAAGGTGGAACAGGAGTGGGCCCCGCGGC 50.77%
Apta_309 DNA TAGCCAAGGTAACCAGTACAAGGTGCTAAACGTAATGGCTTCGGCTTAC 50.77%
Apta_621 DNA AAGCTTGCTTTATAGCCTGCAGCGATTCTTGATCGGAAAAGGCTGAGAGCTACGC 50.77%
Apta_639 DNA CTAAGCACAGGGAAACCAGCTAATGAGTTAGGCCTGTCCCCCACG 50.77%
Apta_943 DNA GAAGGTGGAGCGGTTAGGATACTAGCGAATGAAGACACGTTAGCTGATCT 50.77%
Apta_978 DNA GGCGATGAGAACGGGAGCCTGATGATACACACGAGCGATCGCTCATAAAAGCCGTGCCCG 50.77%
Apta_988 DNA AAGGATGACTGACGACGATGGGAATGGAGAGGAAGGGGATATAGGTATGTTGGATGTAG 50.77%
Apta_309 DNA TAGCCAAGGTAACCAGTACAAGGTGCTAAACGTAATGGCTTCGGCTTAC 50.77%